Uses of Class
eu.etaxonomy.cdm.model.common.CdmBase

Packages that use CdmBase

eu.etaxonomy.cdm.api.application
eu.etaxonomy.cdm.api.service
eu.etaxonomy.cdm.api.service.search
eu.etaxonomy.cdm.database
eu.etaxonomy.cdm.ext.common
eu.etaxonomy.cdm.ext.openurl
eu.etaxonomy.cdm.io.berlinModel
eu.etaxonomy.cdm.io.berlinModel.in
eu.etaxonomy.cdm.io.berlinModel.in.validation
eu.etaxonomy.cdm.io.berlinModel.out
eu.etaxonomy.cdm.io.berlinModel.out.mapper
eu.etaxonomy.cdm.io.common
eu.etaxonomy.cdm.io.common.mapping
eu.etaxonomy.cdm.io.common.mapping.out
eu.etaxonomy.cdm.io.csv.redlist.out
eu.etaxonomy.cdm.io.dwca.in
eu.etaxonomy.cdm.io.dwca.out
eu.etaxonomy.cdm.io.markup
eu.etaxonomy.cdm.io.reference.endnote.in
eu.etaxonomy.cdm.io.sdd.in
eu.etaxonomy.cdm.io.tcsrdf
eu.etaxonomy.cdm.io.tcsxml.in
eu.etaxonomy.cdm.io.tcsxml.out
eu.etaxonomy.cdm.model
eu.etaxonomy.cdm.model.agent	Provides classes for different kinds of agents such as persons, teams or institutions.
eu.etaxonomy.cdm.model.common	Provides general technical or common classes on the base of which are built the model classes of all others thematic packages.
eu.etaxonomy.cdm.model.description	Provides classes: to describe specimens, observations or taxa, to associate other factual informations to specimens, observations or taxa (including distribution), to supply additional information about taxon names and to support identification by means of keys. Related documentation UML Diagrams
eu.etaxonomy.cdm.model.location	Provides classes for georeferencing gathering or observation events.
eu.etaxonomy.cdm.model.media
eu.etaxonomy.cdm.model.molecular	Provides classes for DNA samples and related sequences.
eu.etaxonomy.cdm.model.name	Provides classes for nomenclature and typification.
eu.etaxonomy.cdm.model.occurrence	Provides classes for specimens, collections and field observations.
eu.etaxonomy.cdm.model.reference	Provides classes for nomenclatural and bibliographical references either as a complex structure of specific subclasses according to the different kind of possible references used (see StrictReferenceBase class and subclasses) or as a flat structure (see BibTexReference class). Related documentation UML Diagrams
eu.etaxonomy.cdm.model.taxon	Provides classes for taxonomy including synonymy and concept synonymy.
eu.etaxonomy.cdm.model.view
eu.etaxonomy.cdm.persistence.dao
eu.etaxonomy.cdm.persistence.dao.common
eu.etaxonomy.cdm.persistence.dao.hibernate
eu.etaxonomy.cdm.persistence.dao.hibernate.common
eu.etaxonomy.cdm.persistence.hibernate
eu.etaxonomy.cdm.persistence.hibernate.permission
eu.etaxonomy.cdm.persistence.hibernate.permission.voter
eu.etaxonomy.cdm.persistence.hibernate.replace
eu.etaxonomy.cdm.persistence.hibernate.replace.impl
eu.etaxonomy.cdm.persistence.query
eu.etaxonomy.cdm.remote.controller
eu.etaxonomy.cdm.remote.json.processor
eu.etaxonomy.cdm.remote.json.processor.bean
eu.etaxonomy.cdm.strategy.merge

Uses of CdmBase in eu.etaxonomy.cdm.api.application

Methods in eu.etaxonomy.cdm.api.application that return types with arguments of type CdmBase

IService<CdmBase>	ICdmApplicationConfiguration.getMainService()
IService<CdmBase>	CdmApplicationDefaultConfiguration.getMainService()
IService<CdmBase>	CdmApplicationController.getMainService()

Methods in eu.etaxonomy.cdm.api.application with parameters of type CdmBase

boolean

CdmApplicationController.currentAuthentiationHasPermissions(CdmBase targetDomainObject, EnumSet<CRUD> permission)

Uses of CdmBase in eu.etaxonomy.cdm.api.service

Classes in eu.etaxonomy.cdm.api.service with type parameters of type CdmBase

class

ServiceBase<T extends CdmBase,DAO extends ICdmEntityDao<T>>

Fields in eu.etaxonomy.cdm.api.service declared as CdmBase

protected CdmBase

DeleteResult.PersistPair.objectToPersist

Fields in eu.etaxonomy.cdm.api.service with type parameters of type CdmBase

protected ICdmEntityDao<CdmBase>	DeleteResult.PersistPair.dao
protected ICdmEntityDao<CdmBase>	ServiceImpl.mainDao

Methods in eu.etaxonomy.cdm.api.service that return types with arguments of type CdmBase

Set<CdmBase>	ICommonService.getReferencingObjects(CdmBase referencedCdmBase) Returns all CdmBase objects that reference the referencedCdmBase.
Set<CdmBase>	CommonServiceImpl.getReferencingObjects(CdmBase referencedCdmBase)
Set<CdmBase>	DeleteResult.getRelatedObjects() Related objects that prevent the delete action to take place.

Methods in eu.etaxonomy.cdm.api.service with parameters of type CdmBase

void	DeleteResult.addRelatedObject(CdmBase relatedObject)
protected List<T>	IdentifiableServiceBase.findCdmObjectsByTitle(String title, CdmBase sessionObject)
List	NameServiceImpl.findNamesByTitle(String title, CdmBase sessionObject) Deprecated. To be removed for harmonization see http://dev.e-taxonomy.eu/trac/wiki/CdmLibraryConventions duplicate of findByTitle()
List	INameService.findNamesByTitle(String title, CdmBase sessionObject)
List	NameServiceImpl.getNamesByName(String name, CdmBase sessionObject) TODO candidate for harmonization
List	INameService.getNamesByName(String name, CdmBase sessionObject)
Set<CdmBase>	ICommonService.getReferencingObjects(CdmBase referencedCdmBase) Returns all CdmBase objects that reference the referencedCdmBase.
Set<CdmBase>	CommonServiceImpl.getReferencingObjects(CdmBase referencedCdmBase)

Method parameters in eu.etaxonomy.cdm.api.service with type arguments of type CdmBase

void	DeleteResult.addRelatedObjects(Set<? extends CdmBase> relatedObjects)
protected LuceneSearch	TaxonServiceImpl.prepareByDescriptionElementFullTextSearch(Class<? extends CdmBase> clazz, String queryString, Classification classification, List<Feature> features, List<Language> languages, boolean highlightFragments)
protected LuceneSearch	TaxonServiceImpl.prepareFindByFullTextSearch(Class<? extends CdmBase> clazz, String queryString, Classification classification, List<Language> languages, boolean highlightFragments)
protected LuceneSearch	NameServiceImpl.prepareFindByFuzzySearch(Class<? extends CdmBase> clazz, NonViralName nvn, float accuracy, List<Language> languages, boolean highlightFragments)
protected void	ServiceImpl.setDao(ICdmEntityDao<CdmBase> dao)

Uses of CdmBase in eu.etaxonomy.cdm.api.service.search

Classes in eu.etaxonomy.cdm.api.service.search with type parameters of type CdmBase

class

SearchResult<T extends CdmBase> TODO class description

Methods in eu.etaxonomy.cdm.api.service.search with type parameters of type CdmBase

protected <T extends CdmBase> void	CdmMassIndexer.createDictionary(Class<T> type, IProgressMonitor monitor)
<T extends CdmBase> List<SearchResult<T>>	SearchResultBuilder.createResultSet(LuceneSearch.TopGroupsWithMaxScore topGroupsResultSet, String[] highlightFields, ICdmEntityDao<T> dao, Map<CdmBaseType,String> idFields, List<String> propertyPaths) Creates a List of SearchResult entities from the supplied TopDocs.
<T extends CdmBase> List<SearchResult<T>>	ISearchResultBuilder.createResultSet(LuceneSearch.TopGroupsWithMaxScore topGroupsResultSet, String[] highlightFields, ICdmEntityDao<T> dao, Map<CdmBaseType,String> idFields, List<String> propertyPaths) Creates a List of SearchResult entities from the supplied TopDocs.
<T extends CdmBase> List<SearchResult<T>>	SearchResultBuilder.createResultSet(org.apache.lucene.search.TopDocs topDocs, String[] highlightFields, ICdmEntityDao<T> dao, Map<CdmBaseType,String> idFields, List<String> propertyPaths) Creates a List of SearchResult entities from the supplied TopDocs.
<T extends CdmBase> List<SearchResult<T>>	ISearchResultBuilder.createResultSet(org.apache.lucene.search.TopDocs topDocs, String[] highlightFields, ICdmEntityDao<T> dao, Map<CdmBaseType,String> idFields, List<String> propertyPaths) Creates a List of SearchResult entities from the supplied TopDocs.
protected <T extends CdmBase> void	CdmMassIndexer.purge(Class<T> type, IProgressMonitor monitor)
protected <T extends CdmBase> void	CdmMassIndexer.reindex(Class<T> type, IProgressMonitor monitor)

Methods in eu.etaxonomy.cdm.api.service.search that return types with arguments of type CdmBase

Class<? extends CdmBase>	LuceneSearch.getClazz()
protected Class<? extends CdmBase>	LuceneSearch.getDirectorySelectClass()
protected Class<? extends CdmBase>	LuceneSearch.pushAbstractBaseTypeDown(Class<? extends CdmBase> type) TODO the abstract base class DescriptionElementBase can not be used, so we are using an arbitraty subclass to find the DirectoryProvider, future versions of hibernate search my allow using abstract base classes see http://stackoverflow.com/questions/492184/how-do-you-find-all-subclasses-of-a-given-class-in-java

Methods in eu.etaxonomy.cdm.api.service.search with parameters of type CdmBase

org.apache.lucene.search.Query

QueryFactory.newEntityIdQuery(String idFieldName, CdmBase entitiy)

Method parameters in eu.etaxonomy.cdm.api.service.search with type arguments of type CdmBase

protected Class<? extends CdmBase>	LuceneSearch.pushAbstractBaseTypeDown(Class<? extends CdmBase> type) TODO the abstract base class DescriptionElementBase can not be used, so we are using an arbitraty subclass to find the DirectoryProvider, future versions of hibernate search my allow using abstract base classes see http://stackoverflow.com/questions/492184/how-do-you-find-all-subclasses-of-a-given-class-in-java
void	LuceneSearch.setClazz(Class<? extends CdmBase> clazz) Sets the Class to use as filter criterion, in case the supplied Class equals the directorySelectClass the Class is set to null

Constructor parameters in eu.etaxonomy.cdm.api.service.search with type arguments of type CdmBase

LuceneSearch(org.hibernate.Session session, Class<? extends CdmBase> directorySelectClass)

LuceneSearch(org.hibernate.Session session, String groupByField, Class<? extends CdmBase> directorySelectClass)

Uses of CdmBase in eu.etaxonomy.cdm.database

Constructors in eu.etaxonomy.cdm.database with parameters of type CdmBase

EvaluationFailedException(org.springframework.security.core.Authentication authentication, CdmBase entity, EnumSet<CRUD> requiredOperation)

EvaluationFailedException(org.springframework.security.core.Authentication authentication, CdmBase entity, Operation requiredOperation)

EvaluationFailedException(org.springframework.security.core.Authentication authentication, CdmBase entity, String requiredOperation)

Uses of CdmBase in eu.etaxonomy.cdm.ext.common

Classes in eu.etaxonomy.cdm.ext.common with type parameters of type CdmBase

class	SchemaAdapterBase<T extends CdmBase>
class	ServiceWrapperBase<T extends CdmBase>

Uses of CdmBase in eu.etaxonomy.cdm.ext.openurl

Subclasses of CdmBase in eu.etaxonomy.cdm.ext.openurl

class

OpenUrlReference<S extends IReferenceBaseCacheStrategy>

Uses of CdmBase in eu.etaxonomy.cdm.io.berlinModel

Classes in eu.etaxonomy.cdm.io.berlinModel with type parameters of type CdmBase

class	CdmOneToManyMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeMapperBase>
class	CdmOneToManyMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeMapperBase>

Uses of CdmBase in eu.etaxonomy.cdm.io.berlinModel.in

Methods in eu.etaxonomy.cdm.io.berlinModel.in that return types with arguments of type CdmBase

Map<Object,Map<String,? extends CdmBase>>	BerlinModelTaxonRelationImport.getRelatedObjectsForFlatPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelTaxonRelationImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelWebMarkerImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelCommonNamesImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelOccurrenceImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelTaxonNameRelationImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelTypesImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelAuthorTeamImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelAuthorImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelNameFactsImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelWebMarkerCategoryImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelReferenceImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelTaxonImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelOccurrenceSourceImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelTaxonNameImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelRefDetailImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelUserImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelNameStatusImport.getRelatedObjectsForPartition(ResultSet rs)
Map<Object,Map<String,? extends CdmBase>>	BerlinModelFactsImport.getRelatedObjectsForPartition(ResultSet rs)

Uses of CdmBase in eu.etaxonomy.cdm.io.berlinModel.in.validation

Methods in eu.etaxonomy.cdm.io.berlinModel.in.validation that return types with arguments of type CdmBase

Map<Object,Map<String,? extends CdmBase>>

BerlinModelGeneralImportValidator.getRelatedObjectsForPartition(ResultSet rs)

Uses of CdmBase in eu.etaxonomy.cdm.io.berlinModel.out

Classes in eu.etaxonomy.cdm.io.berlinModel.out with type parameters of type CdmBase

class

BerlinModelExportBase<T extends CdmBase>

Methods in eu.etaxonomy.cdm.io.berlinModel.out that return types with arguments of type CdmBase

Class<? extends CdmBase>	BerlinModelFactExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelTaxonRelationExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelTaxonExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelAuthorExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelNameRelationExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelAuthorTeamExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelClassificationExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelTaxonNameExport.getStandardMethodParameter()
Class<? extends CdmBase>	BerlinModelReferenceExport.getStandardMethodParameter()

Uses of CdmBase in eu.etaxonomy.cdm.io.berlinModel.out.mapper

Methods in eu.etaxonomy.cdm.io.berlinModel.out.mapper with parameters of type CdmBase

protected boolean	TeamOrPersonMapper.doInvoke(CdmBase cdmBase)
protected Integer	RefDetailMapper.getId(CdmBase cdmBase)
protected Integer	FactCategoryMapper.getId(CdmBase cdmBase)
protected Object	RefDetailMapper.getValue(CdmBase cdmBase)
protected Object	FactCategoryMapper.getValue(CdmBase cdmBase)
protected Object	TeamOrPersonMapper.getValue(CdmBase cdmBase)
Object	FactCategoryMapper.invoke(CdmBase cdmBase, boolean xxx)

Uses of CdmBase in eu.etaxonomy.cdm.io.common

Classes in eu.etaxonomy.cdm.io.common with type parameters of type CdmBase

class

MapWrapper<T extends CdmBase>

Fields in eu.etaxonomy.cdm.io.common with type parameters of type CdmBase

protected IService<CdmBase>	ImportStateBase.service
protected Map<String,MapWrapper<? extends CdmBase>>	ImportStateBase.stores

Methods in eu.etaxonomy.cdm.io.common with type parameters of type CdmBase

protected <T extends CdmBase> T	CdmIoBase.getInstance(Class<? extends T> clazz)
<T extends CdmBase> T	DbImportStateBase.getRelatedObject(Object namespace, String id, Class<T> clazz)

Methods in eu.etaxonomy.cdm.io.common that return CdmBase

CdmBase	DbImportStateBase.getRelatedObject(Object namespace, String id)
CdmBase	RelatedObjectsHelper.getRelatedObject(Object namespace, String id) Returns the cdmbase object for the key pair (namespace, id).
CdmBase	IPartitionedState.getRelatedObject(Object namespace, String id) Returns a related object defined by the namespace and the id.

Methods in eu.etaxonomy.cdm.io.common that return types with arguments of type CdmBase

Map<String,? extends CdmBase>	ResultSetPartitioner.getObjectMap(Object key)
Map<Object,Map<String,? extends CdmBase>>	IPartitionedIO.getRelatedObjectsForPartition(ResultSet rs)
abstract Class<? extends CdmBase>	DbExportBase.getStandardMethodParameter()
MapWrapper<? extends CdmBase>	ImportStateBase.getStore(String storeLabel)
Map<String,MapWrapper<? extends CdmBase>>	ImportStateBase.getStores()

Methods in eu.etaxonomy.cdm.io.common with parameters of type CdmBase

static boolean	ImportHelper.addBooleanValue(ResultSet rs, CdmBase cdmBase, String dbAttrName, String cdmAttrName)
static boolean	ImportHelper.addMultipleValues(List<Object> sourceValues, CdmBase cdmBase, String cdmAttrName, List<Class> classes, boolean overwriteNull, boolean obligat)
void	CdmImportBase.addOriginalSource(CdmBase cdmBase, Object idAttributeValue, String namespace, Reference citation) Adds an orginal source to a sourceable objects (implemented for Identifiable entity and description element.
void	CdmImportBase.addOriginalSource(ResultSet rs, CdmBase cdmBase, String dbIdAttribute, String namespace, Reference citation)
void	DbImportStateBase.addRelatedObject(Object namespace, String id, CdmBase relatedObject)
void	IPartitionedState.addRelatedObject(Object namespace, String id, CdmBase relatedObject)
void	RelatedObjectsHelper.addRelatedObjet(Object namespace, String id, CdmBase relatedObject) Adds a related object to the underlying map.
static boolean	ImportHelper.addStringValue(ResultSet rs, CdmBase cdmBase, String dbAttrName, String cdmAttrName, boolean blankToNull)
static boolean	ImportHelper.addValue(Object sourceValue, CdmBase cdmBase, String cdmAttrName, Class<?> clazz, boolean overwriteNull, boolean obligat)
static boolean	ImportHelper.addValue(ResultSet rs, CdmBase cdmBase, String dbAttrName, String cdmAttrName, Class clazz, boolean overwriteNull, boolean blankToNull)
static boolean	ImportHelper.addXmlBooleanValue(org.jdom.Element root, CdmBase cdmBase, String xmlElementName, org.jdom.Namespace namespace, String cdmAttrName)
static boolean	ImportHelper.addXmlStringValue(org.jdom.Element root, CdmBase cdmBase, String xmlElementName, org.jdom.Namespace namespace, String cdmAttrName)
static boolean	ImportHelper.addXmlStringValue(org.jdom.Element root, CdmBase cdmBase, String xmlElementName, org.jdom.Namespace namespace, String cdmAttrName, boolean overwriteNull)
static boolean	ImportHelper.addXmlValue(org.jdom.Element root, CdmBase cdmBase, String xmlElementName, org.jdom.Namespace namespace, String cdmAttrName, Class clazz, boolean overwriteNull)
static boolean	ImportHelper.addXmlValue(org.jdom.Element root, CdmBase cdmBase, String xmlElementName, org.jdom.Namespace namespace, String cdmAttrName, Class clazz, boolean overwriteNull, boolean obligat)
String	XmlExportState.getDbId(CdmBase cdmBase)
Integer	DbExportStateBase.getDbId(CdmBase cdmBase)
Object	DbExportBase.getDbId(CdmBase cdmBase, STATE state)
Object	CdmExportBase.getDbId(CdmBase cdmBase, STATE state)
protected Object	DbExportBase.getDbIdCdmWithExceptions(CdmBase cdmBase, STATE state)
static <T> T	ImportHelper.getValue(CdmBase cdmBase, String cdmAttrName, boolean isBoolean, boolean obligatory)
void	DbExportStateBase.putDbId(CdmBase cdmBase, int dbId)
void	XmlExportState.putDbId(CdmBase cdmBase, String xmlId)

Method parameters in eu.etaxonomy.cdm.io.common with type arguments of type CdmBase

boolean	MapWrapper.makeNewMap(IService<CdmBase> service)
void	DbImportStateBase.setRelatedObjects(Map<Object,Map<String,CdmBase>> relatedObjects)
void	RelatedObjectsHelper.setRelatedObjects(Map<Object,Map<String,CdmBase>> relatedObjects)
void	IPartitionedState.setRelatedObjects(Map<Object,Map<String,CdmBase>> relatedObjects) Sets the related objects map.
void	ImportStateBase.setStores(Map<String,MapWrapper<? extends CdmBase>> stores)

Constructor parameters in eu.etaxonomy.cdm.io.common with type arguments of type CdmBase

MapWrapper(IService<CdmBase> service)

Uses of CdmBase in eu.etaxonomy.cdm.io.common.mapping

Classes in eu.etaxonomy.cdm.io.common.mapping with type parameters of type CdmBase

class	DbImportMultiAttributeMapperBase<CDMBASE extends CdmBase,STATE extends DbImportStateBase<?,?>>
class	DbImportMultiLanguageTextMapper<CDMBASE extends CdmBase>
class	DbSingleAttributeImportMapperBase<STATE extends DbImportStateBase<?,?>,CDM_BASE extends CdmBase>
interface	IDbImportMapper<STATE extends DbImportStateBase<?,?>,CDM_BASE extends CdmBase>
interface	IMappingImport<T extends CdmBase,STATE extends ImportStateBase>

Methods in eu.etaxonomy.cdm.io.common.mapping that return CdmBase

protected CdmBase	DbImportUuidMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportTruncatedStringMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportLsidMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportStringMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportNameTypeDesignationMapper.getRelatedObject(ResultSet rs, String dbAttribute) //TODO copied from DbImportObjectMapper.
protected CdmBase	DbImportSynonymMapper.getRelatedObject(ResultSet rs, String dbAttribute) //TODO copied from DbImportObjectMapper.
protected CdmBase	DbImportMultiAttributeMapperBase.getRelatedObject(ResultSet rs, String namespace, String fkAttribute) Retrieves a related object from the state's related object map.
protected CdmBase	DbImportTaxIncludedInMapper.getRelatedObject(ResultSet rs, String dbAttribute, String namespace) //TODO copied from DbImportObjectMapper.
protected CdmBase	DbImportMultiAttributeMapperBase.getRelatedObject(String namespace, String foreignKey) Retrieves a related object from the state's related object map.
CdmBase	DbIgnoreMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportNameTypeDesignationMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportTaxIncludedInMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportSynonymMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbNotYetImplementedMapper.invoke(ResultSet rs, CdmBase cdmBase)

Methods in eu.etaxonomy.cdm.io.common.mapping that return types with arguments of type CdmBase

Class<? extends CdmBase>	DbImportMapperBase.getCdmClass()
static DbImportMultiLanguageTextMapper<CdmBase>	DbImportMultiLanguageTextMapper.NewInstance(String dbTextAttribute, String dbLanguageAttribute, String languageNamespace, String cdmMultiLanguageTextAttribute)

Methods in eu.etaxonomy.cdm.io.common.mapping with parameters of type CdmBase

protected CdmBase	DbImportUuidMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportTruncatedStringMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportLsidMapper.doInvoke(CdmBase cdmBase, Object value)
protected CdmBase	DbImportStringMapper.doInvoke(CdmBase cdmBase, Object value)
boolean	DbImportMarkerMapper.invoke(Map<String,Object> valueMap, CdmBase cdmBase)
boolean	DbImportExtensionMapper.invoke(Map<String,Object> valueMap, CdmBase cdmBase)
CdmBase	DbIgnoreMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportNameTypeDesignationMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportTaxIncludedInMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbImportSynonymMapper.invoke(ResultSet rs, CdmBase cdmBase)
CdmBase	DbNotYetImplementedMapper.invoke(ResultSet rs, CdmBase cdmBase)

Method parameters in eu.etaxonomy.cdm.io.common.mapping with type arguments of type CdmBase

void	DbIgnoreMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportImageGalleryMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportMarkerMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportMultiLanguageTextMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportExtensionMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportAnnotationMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbImportTruncatedStringMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
void	DbNotYetImplementedMapper.initialize(DbImportStateBase<?,?> state, Class<? extends CdmBase> destinationClass)
boolean	DbImportMapping.initialize(DbImportStateBase state, Class<? extends CdmBase> destinationClass)
void	DbImportImageGalleryMapper.initialize(ITermService service, BerlinModelImportState state, Class<? extends CdmBase> destinationClass)
void	DbImportMapperBase.initialize(STATE state, Class<? extends CdmBase> cdmClass)
void	DbImportMethodMapper.initialize(STATE state, Class<? extends CdmBase> destinationClass)
void	DbImportMultiAttributeMapperBase.initialize(STATE state, Class<? extends CdmBase> destinationClass)
void	IDbImportMapper.initialize(STATE state, Class<? extends CdmBase> destinationClass)
void	DbSingleAttributeImportMapperBase.initialize(STATE state, Class<? extends CdmBase> destinationClass)
boolean	DbImportMapping.invoke(ResultSet rs, Set<CdmBase> objectsToSave) Invokes the second path mapping if one has been defined
boolean	DbImportMapping.invoke(ResultSet rs, Set<CdmBase> objectsToSave, boolean secondPath) Invokes the mapping.
void	DbImportMapperBase.setCdmClass(Class<? extends CdmBase> cdmClass)

Uses of CdmBase in eu.etaxonomy.cdm.io.common.mapping.out

Methods in eu.etaxonomy.cdm.io.common.mapping.out that return CdmBase

CdmBase

ObjectChangeMapper.getNewObject(CdmBase oldCdmBase)

Methods in eu.etaxonomy.cdm.io.common.mapping.out with parameters of type CdmBase

protected boolean	IdMapper.doInvoke(CdmBase cdmBase)
protected boolean	DbSingleAttributeExportMapperBase.doInvoke(CdmBase cdmBase)
protected boolean	DbExportNotYetImplementedMapper.doInvoke(CdmBase cdmBase)
protected boolean	DbSimpleFilterMapper.doInvoke(CdmBase cdmBase)
protected boolean	DbExportIgnoreMapper.doInvoke(CdmBase cdmBase)
protected Integer	DbObjectMapper.getId(CdmBase cdmBase)
CdmBase	ObjectChangeMapper.getNewObject(CdmBase oldCdmBase)
protected Object	DbLanguageMapper.getValue(CdmBase cdmBase)
protected Object	DbAnnotationMapper.getValue(CdmBase cdmBase)
protected Object	DbIntegerExtensionMapper.getValue(CdmBase cdmBase)
protected Object	IdMapper.getValue(CdmBase cdmBase)
protected Object	DbNullMapper.getValue(CdmBase cdmBase)
protected Object	DbSingleAttributeExportMapperBase.getValue(CdmBase cdmBase)
protected Object	DbDistributionStatusMapper.getValue(CdmBase cdmBase)
protected Object	DbConstantMapper.getValue(CdmBase cdmBase)
protected Object	DbMarkerMapper.getValue(CdmBase cdmBase)
protected Object	DbTimePeriodMapper.getValue(CdmBase cdmBase)
protected Object	DbLastActionMapper.getValue(CdmBase cdmBase)
protected Object	DbIntegerAnnotationMapper.getValue(CdmBase cdmBase)
protected Object	DbExtensionMapper.getValue(CdmBase cdmBase)
protected Object	DbSingleSourceMapper.getValue(CdmBase cdmBase)
protected Object	MethodMapper.getValue(CdmBase cdmBase)
protected Object	DbImageMapper.getValue(CdmBase cdmBase)
protected Object	DbUserMapper.getValue(CdmBase cdmBase)
protected Object	DbDescriptionElementTaxonMapper.getValue(CdmBase cdmBase)
protected Object	DbAreaMapper.getValue(CdmBase cdmBase)
protected Object	DbObjectMapper.getValue(CdmBase cdmBase)
protected Object	DbSequenceMapper.getValue(CdmBase cdmBase)
protected Object	DbOriginalNameMapper.getValue(CdmBase cdmBase)
protected Object	DbTextDataMapper.getValue(CdmBase cdmBase)
protected Object	DbUriMapper.getValue(CdmBase cdmBase)
protected Object	DbStringMapper.getValue(CdmBase cdmBase)
boolean	DbSingleAttributeExportMapperBase.invoke(CdmBase cdmBase)
boolean	IDbExportMapper.invoke(CdmBase cdmBase)
boolean	CreatedAndNotesMapper.invoke(CdmBase cdmBase)
boolean	ObjectChangeMapper.invoke(CdmBase cdmBase)
boolean	CollectionExportMapping.invoke(CdmBase parent)
boolean	CdmDbExportMapping.invoke(CdmBase cdmBase)

Method parameters in eu.etaxonomy.cdm.io.common.mapping.out with type arguments of type CdmBase

static ObjectChangeMapper	ObjectChangeMapper.NewInstance(Class<? extends CdmBase> oldClass, Class<? extends CdmBase> newClass, String cdmAttribute)
static ObjectChangeMapper	ObjectChangeMapper.NewInstance(Class<? extends CdmBase> oldClass, Class<? extends CdmBase> newClass, String cdmAttribute)
static DbLanguageMapper	DbLanguageMapper.NewInstance(Class<? extends CdmBase> cdmClass, String cdmAttribute, String dbAttributeString, boolean isCache)
static DbAreaMapper	DbAreaMapper.NewInstance(Class<? extends CdmBase> cdmClass, String cdmAttribute, String dbAttributeString, boolean isCache)

Constructor parameters in eu.etaxonomy.cdm.io.common.mapping.out with type arguments of type CdmBase

DbAreaMapper(Class<? extends CdmBase> clazz, String methodName, Class<?>[] parameterTypes, String cdmAttribute, String dbAttributeString, boolean isCache, Object defaultValue)

DbLanguageMapper(Class<? extends CdmBase> clazz, String methodName, Class<?>[] parameterTypes, String cdmAttribute, String dbAttributeString, boolean isCache, Object defaultValue)

ObjectChangeMapper(Class<? extends CdmBase> oldClazz, Class<? extends CdmBase> newClazz, String methodName, Class<?>... parameterTypes)

ObjectChangeMapper(Class<? extends CdmBase> oldClazz, Class<? extends CdmBase> newClazz, String methodName, Class<?>... parameterTypes)

Uses of CdmBase in eu.etaxonomy.cdm.io.csv.redlist.out

Methods in eu.etaxonomy.cdm.io.csv.redlist.out with parameters of type CdmBase

protected void	CsvExportBaseRedlist.addExistingRecord(CdmBase cdmBase)
protected void	CsvExportBaseRedlist.addExistingRecordUuid(CdmBase cdmBase)
protected boolean	CsvExportBaseRedlist.recordExists(CdmBase el)
protected boolean	CsvExportBaseRedlist.recordExistsUuid(CdmBase el)
void	CsvId.setId(CdmBase cdmBase)

Uses of CdmBase in eu.etaxonomy.cdm.io.dwca.in

Classes in eu.etaxonomy.cdm.io.dwca.in with type parameters of type CdmBase

class

MappedCdmBase<CDMBASE extends CdmBase>

Uses of CdmBase in eu.etaxonomy.cdm.io.dwca.out

Methods in eu.etaxonomy.cdm.io.dwca.out with parameters of type CdmBase

protected void	DwcaExportBase.addExistingRecord(CdmBase cdmBase)
protected void	DwcaExportBase.addExistingRecordUuid(CdmBase cdmBase)
protected boolean	DwcaExportBase.recordExists(CdmBase el)
protected boolean	DwcaExportBase.recordExistsUuid(CdmBase el)
void	DwcaId.setId(CdmBase cdmBase)

Uses of CdmBase in eu.etaxonomy.cdm.io.markup

Methods in eu.etaxonomy.cdm.io.markup with type parameters of type CdmBase

protected <T extends CdmBase> void

MarkupImportBase.save(Collection<T> collection, MarkupImportState state)

Methods in eu.etaxonomy.cdm.io.markup that return CdmBase

CdmBase

MarkupInputStream.read()

Methods in eu.etaxonomy.cdm.io.markup with parameters of type CdmBase

protected void

MarkupImportBase.save(CdmBase cdmBase, MarkupImportState state)

Uses of CdmBase in eu.etaxonomy.cdm.io.reference.endnote.in

Methods in eu.etaxonomy.cdm.io.reference.endnote.in with parameters of type CdmBase

protected boolean

EndNoteImportBase.makeStandardMapper(org.jdom.Element parentElement, CdmBase ref, Set<String> omitAttributes, CdmSingleAttributeXmlMapperBase[] classMappers)

Uses of CdmBase in eu.etaxonomy.cdm.io.sdd.in

Methods in eu.etaxonomy.cdm.io.sdd.in with parameters of type CdmBase

protected void	SDDImport.associateImageWithCdmBase(String refMO, CdmBase cb)
protected void	SDDDataSetImport.associateImageWithCdmBase(String refMO, CdmBase cb)

Uses of CdmBase in eu.etaxonomy.cdm.io.tcsrdf

Classes in eu.etaxonomy.cdm.io.tcsrdf with type parameters of type CdmBase

class	CdmOneToManyXmlMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeXmlMapperBase>
class	CdmOneToManyXmlMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeXmlMapperBase>

Methods in eu.etaxonomy.cdm.io.tcsrdf with parameters of type CdmBase

protected boolean

TcsRdfImportBase.makeStandardMapper(org.jdom.Element parentElement, CdmBase ref, Set<String> omitAttributes, CdmSingleAttributeXmlMapperBase[] classMappers)

Uses of CdmBase in eu.etaxonomy.cdm.io.tcsxml.in

Methods in eu.etaxonomy.cdm.io.tcsxml.in with parameters of type CdmBase

protected boolean

TcsXmlImportBase.makeStandardMapper(org.jdom.Element parentElement, CdmBase ref, Set<String> omitAttributes, CdmSingleAttributeXmlMapperBase[] classMappers)

Uses of CdmBase in eu.etaxonomy.cdm.io.tcsxml.out

Classes in eu.etaxonomy.cdm.io.tcsxml.out with type parameters of type CdmBase

class

TcsXmlExportBase<T extends CdmBase>

Methods in eu.etaxonomy.cdm.io.tcsxml.out that return types with arguments of type CdmBase

abstract Class<? extends CdmBase>

TcsXmlExportBase.getStandardMethodParameter()

Uses of CdmBase in eu.etaxonomy.cdm.model

Methods in eu.etaxonomy.cdm.model that return types with arguments of type CdmBase

Class<? extends CdmBase>	CdmBaseType.getBaseClass()
Set<Class<? extends CdmBase>>	CdmBaseType.getSubClasses()
static Set<Class<? extends CdmBase>>	CdmBaseType.subclassesFor(Class<? extends CdmBase> clazz)

Method parameters in eu.etaxonomy.cdm.model with type arguments of type CdmBase

static Set<Class<? extends CdmBase>>

CdmBaseType.subclassesFor(Class<? extends CdmBase> clazz)

Uses of CdmBase in eu.etaxonomy.cdm.model.agent

Subclasses of CdmBase in eu.etaxonomy.cdm.model.agent

class	Address This class represents atomized postal addresses.
class	AgentBase<S extends IIdentifiableEntityCacheStrategy> The upmost (abstract) class for agents such as persons, teams or institutions.
class	Institution This class represents public or private institutions.
class	InstitutionalMembership This class allows to hold one institution to which a person is affiliated.
class	InstitutionType Represents an element of a controlled vocabulary for different kinds of institutions.
class	Person This class represents human beings, living or dead. It includes name parts, contact details, institutional membership, and other possible information such as life time period, taxonomic and/or geographical specialization.
class	Team This class represents teams of persons.
class	TeamOrPersonBase<T extends TeamOrPersonBase<?>> The abstract class for such agents (persons or teams) who might also be used for authorship of references or of taxon names.

Uses of CdmBase in eu.etaxonomy.cdm.model.common

Subclasses of CdmBase in eu.etaxonomy.cdm.model.common

class	AnnotatableEntity Abstract superclass implementing human annotations and machine markers to be assigned to CDM objects.
class	Annotation
class	AnnotationType Annotation types ...
class	CdmMetaData
class	Credit
class	DefinedTermBase<T extends DefinedTermBase> workaround for enumerations, base type according to TDWG.
class	DescriptionElementSource This class represents an IOriginalSource that can be used with description elements.
class	EventBase
class	Extension This class aims to make available more "attributes" for identifiable entities in a flexible way.
class	ExtensionType Extension types similar to dynamically defined attributes.
class	Figure
class	GrantedAuthorityImpl
class	Group
class	IdentifiableEntity<S extends IIdentifiableEntityCacheStrategy> Superclass for the primary CDM classes that can be referenced from outside via LSIDs and contain a simple generated title string as a label for human reading.
class	IdentifiableSource This class represents an IOriginalSource that can be used with identifiable entity.
class	Language list of languages according to current internet best practices as given by IANA or ISO codes.
class	LanguageString This class is an instantiatable class for the base class LanguageStringBase.
class	LanguageStringBase
class	LSIDAuthority
class	Marker This class aims to make available some "flags" for identifiable entities in a flexible way.
class	MarkerType Marker types similar to dynamically defined attributes.
class	OrderedTermBase<T extends OrderedTermBase>
class	OrderedTermVocabulary<T extends OrderedTermBase>
class	OriginalSourceBase<T extends ISourceable> Abstract base class for classes implementing IOriginalSource.
class	ReferencedEntityBase abstract class for all objects that may have a reference
class	RelationshipBase<FROM extends IRelated,TO extends IRelated,TYPE extends RelationshipTermBase> Concrete implementations of this abstract base class express a directed relationship between two cdm entities ( IRelated ).
class	RelationshipTermBase<T extends RelationshipTermBase>
class	Representation workaround for enumerations
class	TermBase
class	TermVocabulary<T extends DefinedTermBase> A single enumeration must only contain DefinedTerm instances of one kind (this means a subclass of DefinedTerm).
class	User
class	VersionableEntity The class keeps track of versions via a full linked list to different version objects, or a simple updated/updatedBy property in the same object.

Methods in eu.etaxonomy.cdm.model.common with type parameters of type CdmBase

static <T extends CdmBase> T

CdmBase.deproxy(Object object, Class<T> clazz) These methods are present due to HHH-1517 - that in a one-to-many relationship with a superclass at the "one" end, the proxy created by hibernate is the superclass, and not the subclass, resulting in a classcastexception when you try to cast it.

Methods in eu.etaxonomy.cdm.model.common with parameters of type CdmBase

protected void

CdmBase.clone(CdmBase clone)

Method parameters in eu.etaxonomy.cdm.model.common with type arguments of type CdmBase

boolean

CdmBase.isInstanceOf(Class<? extends CdmBase> clazz)

Uses of CdmBase in eu.etaxonomy.cdm.model.description

Subclasses of CdmBase in eu.etaxonomy.cdm.model.description

class	AbsenceTerm This class represents terms describing different types of absence (like "extinct" or just "absent") of a taxon in a particular area.
class	CategoricalData This class represents information pieces expressed in categorical type of data (in opposition to quantitative data on one side and to literal data on the other side).
class	CommonTaxonName This class represents common or vernacular names for taxa.
class	DescriptionBase<S extends IIdentifiableEntityCacheStrategy> The upmost (abstract) class for a description as a whole (with possibly several elementary information data) for a specimen, a taxon or even a taxon name.
class	DescriptionElementBase The upmost (abstract) class for a piece of information) about a specimen, a taxon or even a taxon name.
class	Distribution This class represents elementary distribution data for a taxon.
class	Feature The class for individual properties (also designed as character, type or category) of observed phenomena able to be described or measured.
class	FeatureNode The class for tree nodes within a feature tree structure.
class	FeatureTree The class to arrange features (characters) in a tree structure.
class	IndividualsAssociation This class represents associations between the described specimen or observation and a second one (for instance a host).
class	KeyStatement This class represents a statement or a question within a (polytomous) key.
class	MeasurementUnit This class represents measurement units such as "centimeter" or "degree Celsius".
class	MediaKey The class representing single-access fixed dichotomous or polytomous authored decision keys (as opposed to multiple-access keys) used to identify specimens or observations (this means to assign taxa to).
class	Modifier This class represents possible modulations for the validity of information pieces (DescriptionElementBase description elements).
class	MultiAccessKey The class representing multi-access dynamic keys used to identify specimens or observations (this means to assign taxa to).
class	NaturalLanguageTerm
class	PolytomousKey This class represents a fixed single-access key (dichotomous or polytomous) used to identify (assign a taxon to) a specimen or observation.
class	PolytomousKeyNode This class represents a node within a polytomous key structure.
class	PresenceAbsenceTermBase<T extends PresenceAbsenceTermBase<?>> This (abstract) class represents terms describing the absence (like "extinct") or the presence (like "cultivated") of a taxon in a named area.
class	PresenceTerm This class represents terms describing different types of presence (like "native" or "introduced") of a taxon in a particular area.
class	QuantitativeData This class represents information pieces expressed in numerical data (in opposition to categorical data on one side and to literal data on the other side).
class	Scope The class representing restrictions for the validity of taxon descriptions.
class	Sex The class representing the restriction concerning the sex for the applicability of taxon descriptions.
class	SpecimenDescription This class represents descriptions for specimens or observations.
class	Stage The class representing the restriction concerning the life stage for the applicability of taxon descriptions.
class	State This class represents terms describing different states (like "oval" or "triangular") for features that can be described with categorical values (like for instance shapes).
class	StateData This class represents the assignment of values (state terms) to features corresponding to categorical data.
class	StatisticalMeasure /** This class represents terms describing different statistical measures (such as "sample size", "minimum" or "average") for features that can be described with numerical values (like for instance weights or temperature).
class	StatisticalMeasurementValue This class represents the assignment of numerical values to features corresponding to quantitative data.
class	TaxonDescription This class represents descriptions that delimit or circumscribe a real taxon.
class	TaxonInteraction This class represents interactions between the described taxon and a second one (for instance a parasite, a prey or a hybrid parent).
class	TaxonNameDescription This class represents all piece of information (not ruled by a nomenclatural code) concerning a taxon name like for instance the content of its first publication (protolog) or a picture of this publication.
class	TextData This class represents information pieces expressed in one or several natural languages (for the feature "medical use" for instance).
class	TextFormat The class representing kinds of formats used for structuring text (like "xml schema namespace", "rdf", or any other format).
class	WorkingSet The working set class allows the demarcation of a set of descriptions associated with representations and a set of features and their dependencies.

Uses of CdmBase in eu.etaxonomy.cdm.model.location

Subclasses of CdmBase in eu.etaxonomy.cdm.model.location

class	Continent
class	NamedArea
class	NamedAreaLevel Controlled vocabulary to differentiate levels of areas such as province, state, etc.
class	NamedAreaType Controlled vocabulary to differentiate categories of areas
class	ReferenceSystem Reference systems for coordinates also according to OGC (Open Geographical Consortium) The list should be extensible at runtime through configuration.
class	TdwgArea Area terms according to the TDWG GeographicRegion vocabulary http://rs.tdwg.org/ontology/voc/GeographicRegion.rdf
class	WaterbodyOrCountry +/- current ISO codes.

Uses of CdmBase in eu.etaxonomy.cdm.model.media

Subclasses of CdmBase in eu.etaxonomy.cdm.model.media

class	AudioFile
class	IdentifiableMediaEntity<S extends IIdentifiableEntityCacheStrategy>
class	ImageFile
class	Media A media is any kind of media that represents a media object.
class	MediaRepresentation A media representation is basically anything having a MIME Media Type.
class	MediaRepresentationPart A media representation part is a resource that can be referenced by an URI.
class	MovieFile
class	ReferencedMediaBase
class	Rights Typically, rights information includes a statement about various property rights associated with the resource, including intellectual property rights.
class	RightsTerm

Uses of CdmBase in eu.etaxonomy.cdm.model.molecular

Subclasses of CdmBase in eu.etaxonomy.cdm.model.molecular

class	DnaSample
class	GenBankAccession
class	Locus
class	PhylogeneticTree
class	Sequence

Uses of CdmBase in eu.etaxonomy.cdm.model.name

Subclasses of CdmBase in eu.etaxonomy.cdm.model.name

class	BacterialName The taxon name class for bacteria.
class	BotanicalName The taxon name class for plants and fungi.
class	CultivarPlantName The taxon name class for cultivars (cultivated plants).
class	HomotypicalGroup The homotypical group class represents a set of taxon names associated on the base of their typifications.
class	HybridRelationship The class representing a hybrid relationship between one of the parents of a hybrid taxon name and the hybrid taxon name itself.
class	HybridRelationshipType The class representing the categories of hybrid relationships between a botanical taxon name used as a parent of a hybrid taxon name and the hybrid taxon name itself.
class	NameRelationship The class representing a relationship between two taxon names according to the nomenclatural code which governs both of them.
class	NameRelationshipType The class representing the categories of taxon name relationships between two taxon names.
class	NameTypeDesignation The class representing a typification of a taxon name with a rank above "species aggregate" by another taxon name. According to nomenclature a type of a genus name or of any subdivision of a genus can only be a species name.
class	NameTypeDesignationStatus The terms in this class define the status of a name type designation.
class	NomenclaturalStatus The class representing the assignation of a nomenclatural status to a taxon name.
class	NomenclaturalStatusType The class representing categories of nomenclatural status (like "invalid", "conserved" or "novum") to qualify the use of a particular taxon name string depending on its nomenclatural reference (original publication), on its nomenclatural code and on possible decisions of the corresponding competent authorities.
class	NonViralName<T extends NonViralName> The taxon name class for all non viral taxa.
class	Rank The class representing the taxonomical ranks (like "Family", "Genus" or "Species") used for taxon names across all nomenclatural codes for bacteria (ICNB), viruses (ICVCN), plants and fungi (ICBN), cultivars (ICNCP) and animals (ICZN).
class	SpecimenTypeDesignation The class representing a typification of one or several taxon names by a specimen or a figure.
class	SpecimenTypeDesignationStatus The class representing status (categories) of specimen type designations for a taxon name or a set of them.
class	TaxonNameBase<T extends TaxonNameBase<?,?>,S extends INameCacheStrategy> The upmost (abstract) class for scientific taxon names regardless of any particular nomenclature code.
class	TypeDesignationBase<T extends TypeDesignationStatusBase> The (abstract) class representing a typification of one or several taxon names. All taxon names which have a rank "species aggregate" or lower can only be typified by specimens (a specimen type designation), but taxon names with a higher rank might be typified by an other taxon name with rank "species" or "genus" (a name type designation).
class	TypeDesignationStatusBase<T extends TypeDesignationStatusBase<?>> The class representing status (categories) of specimen type designations for a taxon name or a set of them.
class	ViralName The taxon name class for viral taxa.
class	ZoologicalName The taxon name class for animals.

Uses of CdmBase in eu.etaxonomy.cdm.model.occurrence

Subclasses of CdmBase in eu.etaxonomy.cdm.model.occurrence

class	Collection
class	DerivationEvent
class	DerivationEventType
class	DerivedUnit
class	DerivedUnitBase<S extends IIdentifiableEntityCacheStrategy> http://www.bgbm.org/biodivinf/docs/CollectionModel/ReprintTNR.pdf http://www.bgbm.org/biodivinf/docs/CollectionModel/ Type figures are derived units with at least a figure object in media
class	DeterminationEvent
class	DeterminationModifier modifier for a determination.
class	FieldObservation In situ observation of a taxon in the field.
class	Fossil
class	GatheringEvent The event when gathering a specimen or recording a field observation only
class	LivingBeing
class	Observation
class	PreservationMethod http://rs.tdwg.org/ontology/voc/Collection.rdf#SpecimenPreservationMethodTypeTerm
class	Specimen A specimen is regarded as derived from an field observation, so locality and gathering related information is captured as a separate FieldObservation object related to a specimen via a derivation event
class	SpecimenOrObservationBase<S extends IIdentifiableEntityCacheStrategy> type figures are observations with at least a figure object in media

Uses of CdmBase in eu.etaxonomy.cdm.model.reference

Subclasses of CdmBase in eu.etaxonomy.cdm.model.reference

class	Reference<S extends IReferenceBaseCacheStrategy> The upmost (abstract) class for references (information sources).
class	ReferenceIdentity

Uses of CdmBase in eu.etaxonomy.cdm.model.taxon

Subclasses of CdmBase in eu.etaxonomy.cdm.model.taxon

class	AlternativeTreeRoot
class	Classification
class	Synonym The class for synonyms: these are taxa the taxon names of which are not used by the reference to designate a real taxon but are mentioned as taxon names that were oder are used by some other unspecified references to designate (at least to some extent) the same particular real taxon.
class	SynonymRelationship The class representing the assignation of a synonym to an ("accepted/correct") taxon.
class	SynonymRelationshipType The class representing categories of synonym relationships (like "heterotypic synonym of").
class	Taxon The class for "accepted/correct" taxa (only these taxa according to the opinion of the reference can build a classification).
class	TaxonBase<S extends IIdentifiableEntityCacheStrategy> The upmost (abstract) class for the use of a taxon name in a reference or within a taxonomic view/treatment either as a taxon ("accepted" respectively "correct" name) or as a (junior) synonym.
class	TaxonNode
class	TaxonRelationship The class representing a relationship between two ("accepted/correct") taxa.
class	TaxonRelationshipType The class representing categories of taxon relationships (like "is congruent to" or "is misapplied name for").

Uses of CdmBase in eu.etaxonomy.cdm.model.view

Classes in eu.etaxonomy.cdm.model.view with type parameters of type CdmBase

interface	AuditEventRecord<T extends CdmBase>
class	AuditEventRecordImpl<T extends CdmBase>

Subclasses of CdmBase in eu.etaxonomy.cdm.model.view

class

View use ARCHIVE view/dataset to maintain an archive.

Methods in eu.etaxonomy.cdm.model.view that return types with arguments of type CdmBase

Set<CdmBase>	View.getMembers()
Set<CdmBase>	View.getNonMembers()

Methods in eu.etaxonomy.cdm.model.view with parameters of type CdmBase

void	View.addMember(CdmBase member)
void	View.addNonMember(CdmBase member)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.dao

Classes in eu.etaxonomy.cdm.persistence.dao with type parameters of type CdmBase

class

AutoPropertyInitializer<T extends CdmBase>

Methods in eu.etaxonomy.cdm.persistence.dao that return types with arguments of type CdmBase

Map<Class<? extends CdmBase>,AutoPropertyInitializer<CdmBase>>	AbstractBeanInitializer.getBeanAutoInitializers()
Map<Class<? extends CdmBase>,AutoPropertyInitializer<CdmBase>>	AbstractBeanInitializer.getBeanAutoInitializers()

Method parameters in eu.etaxonomy.cdm.persistence.dao with type arguments of type CdmBase

void	AbstractBeanInitializer.setBeanAutoInitializers(Map<Class<? extends CdmBase>,AutoPropertyInitializer<CdmBase>> beanAutoInitializers)
void	AbstractBeanInitializer.setBeanAutoInitializers(Map<Class<? extends CdmBase>,AutoPropertyInitializer<CdmBase>> beanAutoInitializers)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.dao.common

Classes in eu.etaxonomy.cdm.persistence.dao.common with type parameters of type CdmBase

interface	ICdmEntityDao<T extends CdmBase> an data access interface that all data access classes implement
interface	ISearchableDao<T extends CdmBase>
interface	ITitledDao<T extends CdmBase>

Methods in eu.etaxonomy.cdm.persistence.dao.common with type parameters of type CdmBase

<T extends CdmBase> T	ICdmGenericDao.find(Class<T> clazz, int id)
<T extends CdmBase> void	ICdmGenericDao.merge(T cdmBase1, T cdmBase2, IMergeStrategy mergeStrategy) Merges cdmBase2 into cdmBase2 and rearranges all reference to cdmBase2 by letting them point to cdmBase1.

Methods in eu.etaxonomy.cdm.persistence.dao.common that return types with arguments of type CdmBase

Set<Class<? extends CdmBase>>	ICdmGenericDao.getAllCdmClasses(boolean includeAbstractClasses) Returns all CDM classes.
List<CdmBase>	ICdmGenericDao.getCdmBasesByFieldAndClass(Class clazz, String propertyName, CdmBase referencedCdmBase) Returns a CdmBase object of class clazz that has a property with name propertyName that references the CdmBase object referencedCdmBase.
List<CdmBase>	ICdmGenericDao.getCdmBasesWithItemInCollection(Class itemClass, Class clazz, String propertyName, CdmBase item) Returns ...
Set<CdmBase>	ICdmGenericDao.getReferencingObjects(CdmBase referencedCdmBase) Returns all CdmBase objects that reference the referencedCdmBase.

Methods in eu.etaxonomy.cdm.persistence.dao.common with parameters of type CdmBase

Integer	ITitledDao.countByTitle(String queryString, CdmBase sessionObject)
UUID	ICdmGenericDao.delete(CdmBase persistentObject)
List<T>	ITitledDao.findByTitle(String queryString, CdmBase sessionObject)
List<CdmBase>	ICdmGenericDao.getCdmBasesByFieldAndClass(Class clazz, String propertyName, CdmBase referencedCdmBase) Returns a CdmBase object of class clazz that has a property with name propertyName that references the CdmBase object referencedCdmBase.
List<CdmBase>	ICdmGenericDao.getCdmBasesWithItemInCollection(Class itemClass, Class clazz, String propertyName, CdmBase item) Returns ...
Set<CdmBase>	ICdmGenericDao.getReferencingObjects(CdmBase referencedCdmBase) Returns all CdmBase objects that reference the referencedCdmBase.
UUID	ICdmGenericDao.save(CdmBase newOrManagedObject)
UUID	ICdmGenericDao.saveOrUpdate(CdmBase transientObject)
UUID	ICdmGenericDao.update(CdmBase transientObject)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.dao.hibernate

Classes in eu.etaxonomy.cdm.persistence.dao.hibernate with type parameters of type CdmBase

class

AlternativeSpellingSuggestionParser<T extends CdmBase> Deprecated. Use current methods for alternative spelling suggestions. This class is no longer supported after migration to hibernate 4.x.

Uses of CdmBase in eu.etaxonomy.cdm.persistence.dao.hibernate.common

Classes in eu.etaxonomy.cdm.persistence.dao.hibernate.common with type parameters of type CdmBase

class

CdmEntityDaoBase<T extends CdmBase>

Methods in eu.etaxonomy.cdm.persistence.dao.hibernate.common with type parameters of type CdmBase

<T extends CdmBase> T	CdmGenericDaoImpl.find(Class<T> clazz, int id)
<T extends CdmBase> void	CdmGenericDaoImpl.merge(T cdmBase1, T cdmBase2, IMergeStrategy mergeStrategy)

Methods in eu.etaxonomy.cdm.persistence.dao.hibernate.common that return types with arguments of type CdmBase

Set<Class<? extends CdmBase>>	CdmGenericDaoImpl.getAllCdmClasses(boolean includeAbstractClasses)
List<CdmBase>	CdmGenericDaoImpl.getCdmBasesByFieldAndClass(Class clazz, String propertyName, CdmBase referencedCdmBase)
List<CdmBase>	CdmGenericDaoImpl.getCdmBasesWithItemInCollection(Class itemClass, Class clazz, String propertyName, CdmBase item)
List<CdmBase>	CdmGenericDaoImpl.getHqlResult(String hqlQuery)
Set<CdmBase>	CdmGenericDaoImpl.getReferencingObjects(CdmBase referencedCdmBase)

Methods in eu.etaxonomy.cdm.persistence.dao.hibernate.common with parameters of type CdmBase

Integer	IdentifiableDaoBase.countByTitle(String queryString, CdmBase sessionObject)
List<DefinedTermBase>	DefinedTermDaoImpl.findByTitle(String queryString, CdmBase sessionObject) Searches by Label
List<T>	IdentifiableDaoBase.findByTitle(String queryString, CdmBase sessionObject)
List<CdmBase>	CdmGenericDaoImpl.getCdmBasesByFieldAndClass(Class clazz, String propertyName, CdmBase referencedCdmBase)
List<CdmBase>	CdmGenericDaoImpl.getCdmBasesWithItemInCollection(Class itemClass, Class clazz, String propertyName, CdmBase item)
Set<CdmBase>	CdmGenericDaoImpl.getReferencingObjects(CdmBase referencedCdmBase)
UUID	CdmEntityDaoBase.saveCdmObj(CdmBase cdmObj)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.hibernate

Methods in eu.etaxonomy.cdm.persistence.hibernate that return CdmBase

CdmBase

CdmDataChangeEvent.getEntity()

Uses of CdmBase in eu.etaxonomy.cdm.persistence.hibernate.permission

Constructors in eu.etaxonomy.cdm.persistence.hibernate.permission with parameters of type CdmBase

CdmAuthority(CdmBase targetDomainObject, EnumSet<CRUD> operation, UUID uuid)

CdmAuthority(CdmBase targetDomainObject, String property, EnumSet<CRUD> operation, UUID uuid)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.hibernate.permission.voter

Methods in eu.etaxonomy.cdm.persistence.hibernate.permission.voter that return types with arguments of type CdmBase

Class<? extends CdmBase>	DescriptionElementVoter.getResponsibilityClass()
abstract Class<? extends CdmBase>	CdmPermissionVoter.getResponsibilityClass() Sets the Cdm type, or super type this Voter is responsible for.
Class<? extends CdmBase>	DescriptionBaseVoter.getResponsibilityClass()
Class<? extends CdmBase>	GrantAlwaysVoter.getResponsibilityClass()
Class<? extends CdmBase>	TaxonBaseVoter.getResponsibilityClass()
Class<? extends CdmBase>	TaxonNodeVoter.getResponsibilityClass()

Methods in eu.etaxonomy.cdm.persistence.hibernate.permission.voter with parameters of type CdmBase

int	CdmPermissionVoter.vote(org.springframework.security.core.Authentication authentication, CdmBase object, Collection<org.springframework.security.access.ConfigAttribute> attributes)
int	GrantAlwaysVoter.vote(org.springframework.security.core.Authentication authentication, CdmBase object, Collection<org.springframework.security.access.ConfigAttribute> attributes)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.hibernate.replace

Methods in eu.etaxonomy.cdm.persistence.hibernate.replace that return types with arguments of type CdmBase

List<CdmBase>	ReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
Class<? extends CdmBase>	ReferringObjectMetadata.getType()

Methods in eu.etaxonomy.cdm.persistence.hibernate.replace with parameters of type CdmBase

List<CdmBase>	ReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
void	ReferringObjectMetadata.replace(CdmBase referringObject, CdmBase x, CdmBase y)

Method parameters in eu.etaxonomy.cdm.persistence.hibernate.replace with type arguments of type CdmBase

Set<ReferringObjectMetadata>

ReferringObjectMetadataFactory.get(Class<? extends CdmBase> type)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.hibernate.replace.impl

Fields in eu.etaxonomy.cdm.persistence.hibernate.replace.impl with type parameters of type CdmBase

protected Class<? extends CdmBase>

ReferringObjectMetadataImpl.type

Methods in eu.etaxonomy.cdm.persistence.hibernate.replace.impl that return types with arguments of type CdmBase

List<CdmBase>	ToManyReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
List<CdmBase>	ToOneReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
Class<? extends CdmBase>	ReferringObjectMetadataImpl.getType()

Methods in eu.etaxonomy.cdm.persistence.hibernate.replace.impl with parameters of type CdmBase

List<CdmBase>	ToManyReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
List<CdmBase>	ToOneReferringObjectMetadata.getReferringObjects(CdmBase x, org.hibernate.Session session)
void	ListReferringObjectMetadata.replace(CdmBase referringObject, CdmBase x, CdmBase y)
void	SetReferringObjectMetadata.replace(CdmBase referringObject, CdmBase x, CdmBase y)
void	ToOneReferringObjectMetadata.replace(CdmBase referringObject, CdmBase x, CdmBase y)

Method parameters in eu.etaxonomy.cdm.persistence.hibernate.replace.impl with type arguments of type CdmBase

Set<ReferringObjectMetadata>

ReferringObjectMetadataFactoryImpl.get(Class<? extends CdmBase> toClass)

Constructor parameters in eu.etaxonomy.cdm.persistence.hibernate.replace.impl with type arguments of type CdmBase

ListReferringObjectMetadata(Class fromClass, String propertyName, Class<? extends CdmBase> toClass)

ReferringObjectMetadataImpl(Class fromClass, String propertyName, Class<? extends CdmBase> toClass)

SetReferringObjectMetadata(Class fromClass, String propertyName, Class<? extends CdmBase> toClass)

ToManyReferringObjectMetadata(Class fromClass, String propertyName, Class<? extends CdmBase> toClass)

ToOneReferringObjectMetadata(Class fromClass, String propertyName, Class<? extends CdmBase> toClass)

Uses of CdmBase in eu.etaxonomy.cdm.persistence.query

Method parameters in eu.etaxonomy.cdm.persistence.query with type arguments of type CdmBase

static List<OrderHint>

OrderHint.defaultOrderHintsFor(Class<? extends CdmBase> clazz)

Uses of CdmBase in eu.etaxonomy.cdm.remote.controller

Classes in eu.etaxonomy.cdm.remote.controller with type parameters of type CdmBase

class	AbstractController<T extends CdmBase,SERVICE extends IService<T>>
class	AbstractListController<T extends CdmBase,SERVICE extends IService<T>>
class	BaseController<T extends CdmBase,SERVICE extends IService<T>> based on org.cateproject.controller.common
class	BaseListController<T extends CdmBase,SERVICE extends IService<T>>

Methods in eu.etaxonomy.cdm.remote.controller with type parameters of type CdmBase

protected <CDM_BASE extends CdmBase> CDM_BASE

BaseController.getCdmBaseInstance(Class<CDM_BASE> clazz, IService<CDM_BASE> service, UUID uuid, javax.servlet.http.HttpServletResponse response, List<String> pathProperties)

Uses of CdmBase in eu.etaxonomy.cdm.remote.json.processor

Fields in eu.etaxonomy.cdm.remote.json.processor with type parameters of type CdmBase

protected static ThreadLocal<Set<CdmBase>>

CdmBeanProcessingRegistry.processedBeans Deprecated.

Methods in eu.etaxonomy.cdm.remote.json.processor with parameters of type CdmBase

protected static void	CdmBeanProcessingRegistry.register(CdmBase bean) Deprecated.
protected static void	CdmBeanProcessingRegistry.unregister(CdmBase bean) Deprecated.

Uses of CdmBase in eu.etaxonomy.cdm.remote.json.processor.bean

Classes in eu.etaxonomy.cdm.remote.json.processor.bean with type parameters of type CdmBase

class

AbstractCdmBeanProcessor<T extends CdmBase>

Uses of CdmBase in eu.etaxonomy.cdm.strategy.merge

Fields in eu.etaxonomy.cdm.strategy.merge with type parameters of type CdmBase

protected Class<? extends CdmBase>

DefaultMergeStrategy.mergeClass

Methods in eu.etaxonomy.cdm.strategy.merge that return types with arguments of type CdmBase

Class<? extends CdmBase>

DefaultMergeStrategy.getMergeClass()

Method parameters in eu.etaxonomy.cdm.strategy.merge with type arguments of type CdmBase

static DefaultMergeStrategy	DefaultMergeStrategy.NewInstance(Class<? extends CdmBase> mergeClazz)
void	DefaultMergeStrategy.setMergeClazz(Class<? extends CdmBase> mergeClazz)

Constructor parameters in eu.etaxonomy.cdm.strategy.merge with type arguments of type CdmBase

DefaultMergeStrategy(Class<? extends CdmBase> mergeClazz)