A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

ABBREVIATION - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
abbreviation - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
ABBREVIATION() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 
Abcd206DataHolder - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206DataHolder() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
Abcd206Import - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206Import() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206Import
 
Abcd206ImportConfigurator - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206ImportState - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206ImportState(Abcd206ImportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportState
 
Abcd206WrapperInstance() - Static method in class eu.etaxonomy.cdm.io.common.ImportWrapper
 
Abcd206XMLFieldGetter - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206XMLFieldGetter(Abcd206DataHolder, String) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206XMLFieldGetter
 
ABKHAZIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
About - Class in eu.etaxonomy.cdm.remote.dto.oaipmh
Data "about" the record must be expressed in XML that is compliant with an XML Schema defined by a community.
About() - Constructor for class eu.etaxonomy.cdm.remote.dto.oaipmh.About
 
about - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Record
 
AbsenceTerm - Class in eu.etaxonomy.cdm.model.description
This class represents terms describing different types of absence (like "extinct" or just "absent") of a taxon in a particular area.
AbsenceTerm() - Constructor for class eu.etaxonomy.cdm.model.description.AbsenceTerm
Class constructor: creates a new empty absence term.
AbsenceTerm(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.AbsenceTerm
Class constructor: creates a new absence term with a description (in the default language), a label and a label abbreviation.
ABSENT() - Static method in class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
absolute(int) - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
AbstractBeanInitializer - Class in eu.etaxonomy.cdm.persistence.dao
 
AbstractBeanInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.AbstractBeanInitializer
 
AbstractBeanProcessor<T> - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
AbstractBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractBeanProcessor
 
AbstractCategoricalDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
AbstractCategoricalDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.AbstractCategoricalDescriptionBuilder
 
AbstractCdmBeanProcessor<T extends CdmBase> - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
AbstractCdmBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractCdmBeanProcessor
 
AbstractClassBridge - Class in eu.etaxonomy.cdm.hibernate.search
Base class for class bridges.
AbstractClassBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.AbstractClassBridge
 
AbstractController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
AbstractController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractController
 
AbstractLinkDto - Class in eu.etaxonomy.cdm.remote.dto.polytomouskey
 
AbstractLinkDto() - Constructor for class eu.etaxonomy.cdm.remote.dto.polytomouskey.AbstractLinkDto
 
AbstractListController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
AbstractListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractListController
 
AbstractOaiPmhController<T extends IdentifiableEntity,SERVICE extends IIdentifiableEntityService<T>> - Class in eu.etaxonomy.cdm.remote.controller.oaipmh
 
AbstractOaiPmhController() - Constructor for class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
 
AbstractPagerImpl<T> - Class in eu.etaxonomy.cdm.api.service.pager.impl
 
AbstractPagerImpl(Integer, Integer, Integer, List<T>, String) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Constructor
AbstractPagerImpl(Integer, Integer, Integer, List<T>) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Constructor
AbstractQuantitativeDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
AbstractQuantitativeDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.AbstractQuantitativeDescriptionBuilder
 
AbstractRelationshipEdge<T extends RelationshipTermBase> - Class in eu.etaxonomy.cdm.api.service.util
Holds a RelationshipType (RelationshipTermBase) of type <T> and gives it a direction which is one of: direct, everted: Direction.relatedTo inverse: Direction.relatedFrom bidirectional: Direction.relatedTo and Direction.relatedFrom
AbstractRelationshipEdge(T, RelationshipBase.Direction...) - Constructor for class eu.etaxonomy.cdm.api.service.util.AbstractRelationshipEdge
 
AbstractStringComparator - Class in eu.etaxonomy.cdm.model.common
Abstract Comparator for Strings which allows define substitution rules which are applied to the String to be compared before the actual comparison takes place.
AbstractStringComparator() - Constructor for class eu.etaxonomy.cdm.model.common.AbstractStringComparator
 
AbstractWebApplicationConfigurer - Class in eu.etaxonomy.cdm.remote.config
 
AbstractWebApplicationConfigurer() - Constructor for class eu.etaxonomy.cdm.remote.config.AbstractWebApplicationConfigurer
 
ACCEPTED_NAME_STATUS - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Taxonomic status 'accepted' string
AcceptedNameSearch - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
AcceptedNameSearch() - Constructor for class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch
 
AcceptedNameSearch.Request - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
AcceptedNameSearch.Request() - Constructor for class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch.Request
 
AcceptedNameSearch.Response - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
AcceptedNameSearch.Response() - Constructor for class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch.Response
 
acceptedNameUsage - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
acceptedNameUsageID - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
acceptedTaxonStatusLabel() - Method in enum eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the recommended value for the accepted taxon status according to http://code.google.com/p/darwincore/wiki/Taxon#taxonomicStatus
acceptsDocsOutOfOrder() - Method in class org.apache.lucene.search.MultiCollector
 
ACCESS - Static variable in class eu.etaxonomy.cdm.io.common.Source
 
ACCESS_RIGHTS() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
http://purl.org/dc/terms/accessRights
ACCESSIONING() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
accessionNumber - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
accessionNumber - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
accessRights - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
accountNonExpired - Variable in class eu.etaxonomy.cdm.model.common.User
 
accountNonLocked - Variable in class eu.etaxonomy.cdm.model.common.User
 
accountsFile - Static variable in class eu.etaxonomy.cdm.common.AccountStore
 
AccountStore - Class in eu.etaxonomy.cdm.common
 
AccountStore() - Constructor for class eu.etaxonomy.cdm.common.AccountStore
 
accumulate(TransmissionEngineDistribution.AggregationMode, List<NamedArea>, Rank, Rank, Classification, IProgressMonitor) - Method in class eu.etaxonomy.cdm.api.service.description.TransmissionEngineDistribution
runs both steps Step 1: Accumulate occurrence records by area Step 2: Accumulate by ranks starting from lower rank to upper rank, the status of all children are accumulated on each rank starting from lower rank to upper rank.
accumulateByArea(List<NamedArea>, Classification, IProgressMonitor, boolean) - Method in class eu.etaxonomy.cdm.api.service.description.TransmissionEngineDistribution
Step 1: Accumulate occurrence records by area areas are projected to super areas e.g.: HS <-- HS(A), HS(G), HS(S) super areas do initially not have a status set ==> Prerequisite to check in CDM areas having a summary status of summary value different from TransmissionEngineDistribution.getByAreaIgnoreStatusList() are ignored areas have a priority value, the status of the area with highest priority determines the status of the super area the source references of the accumulated distributions are also accumulated into the new distribution,, this has been especially implemented for the EuroMed Checklist Vol2 and might not be a general requirement
accumulateByRank(Rank, Rank, Classification, IProgressMonitor, boolean) - Method in class eu.etaxonomy.cdm.api.service.description.TransmissionEngineDistribution
Step 2: Accumulate by ranks staring from lower rank to upper rank, the status of all children are accumulated on each rank starting from lower rank to upper rank.
ACHINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ACOLI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Actor - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
Actor() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.Actor
 
ADANGME() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
add(String, String, String) - Method in class eu.etaxonomy.cdm.ext.geo.GeoServiceArea
 
add(IReader<TYPE>) - Method in class eu.etaxonomy.cdm.io.dwca.in.ConcatenatingReader
 
add(LanguageString) - Method in interface eu.etaxonomy.cdm.model.common.IMultiLanguageText
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the put method instead
add(LanguageString) - Method in class eu.etaxonomy.cdm.model.common.MultilanguageText
Deprecated. 
add(LanguageString) - Method in class eu.etaxonomy.cdm.model.common.PersistentMultiLanguageText
Deprecated. 
add(NamedArea) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.LevelNode
 
add(NamedAreaLevel) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.NamedAreaNode
 
add(CdmFetch) - Method in class eu.etaxonomy.cdm.persistence.fetch.CdmFetch
 
add(CdmDataChangeEvent.EventType, CdmDataChangeEvent) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.NativeSqlOrderHint
 
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.NativeSqlOrderHint
 
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.OrderHint
FIXME document this
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.OrderHint
FIXME document this
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.RandomOrder
 
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.RandomOrder
 
addAddress(String, String, String, WaterbodyOrCountry, String, String, Point) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
Adds a new address to this agent
addAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.Contact
Adds a new postal address to the set of postal addresses of this contact.
addAddress(String, String, String, WaterbodyOrCountry, String, String, Point) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addAnnotation(Annotation) - Method in interface eu.etaxonomy.cdm.model.common.IAnnotatableEntity
 
addAnnotationFromResultSet(ResultSet, String, AnnotatableEntity, Language) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addAppendedTaggedPhrase(List<TaggedText>, NonViralName<?>) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Adds the tag for the appended phrase if an appended phrase exists
addApplicableState(State) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Adds an existing applicable state to the set of applicable states described in this feature node.
addArea(NamedArea) - Method in class eu.etaxonomy.cdm.io.specimen.UnitsGatheringEvent
 
addBasionym(T) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a taxon name as basionym of this taxon name.
addBasionym(T, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a taxon name as basionym of this taxon name and keeps the nomenclatural rule considered for it.
addBooleanValue(ResultSet, CdmBase, String, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addCacheMatcher(CacheMatcher) - Method in class eu.etaxonomy.cdm.strategy.match.Matching
 
addChild(TreeNode<T>) - Method in class eu.etaxonomy.cdm.common.TreeNode
Adds a child to the list of children for this TreeNode.
addChild(FeatureNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Adds the given feature node at the end of the list of children of this feature node.
addChild(FeatureNode, int) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Inserts the given feature node in the list of children of this feature node at the given (index + 1) position.
addChild(PolytomousKeyNode) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Adds the given polytomous key node at the end of the list of children of this polytomous key node.
addChild(PolytomousKeyNode, int) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Inserts the given child node in the list of children of this polytomous key node at the given (index + 1) position.
addChildNode(TaxonNode, Reference, String, Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildNode(TaxonNode, Reference, String, Synonym) - Method in interface eu.etaxonomy.cdm.model.taxon.ITreeNode
Adds a taxon node as a child of the ITreeNode
addChildNode(TaxonNode, Reference, String, Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Moves a taxon node to a new parent.
addChildTaxon(Taxon, Reference, String, Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildTaxon(Taxon, Reference, String, Synonym) - Method in interface eu.etaxonomy.cdm.model.taxon.ITreeNode
Adds a taxon as a child of the ITreeNode
addChildTaxon(Taxon, Reference, String, Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
addChromatogram(Media) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addCitation(Reference) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addCollectingArea(NamedArea) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addCollectingArea(NamedArea) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Further collecting areas.
addCollectingAreas(Collection<NamedArea>) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addCollectionMapping(CollectionExportMapping<STATE, CONFIG, TRANSFORM>) - Method in class eu.etaxonomy.cdm.io.common.mapping.out.CdmDbExportMapping
 
addContent(Element, Element) - Static method in class eu.etaxonomy.cdm.print.XMLHelper
Adds an element as a child to another element
addContent(Element, String, Element) - Static method in class eu.etaxonomy.cdm.print.XMLHelper
Adds an element to the child element of another element using the given name to select the child element
addContinents(Continent) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
addCount(StatisticsTypeEnum, Integer) - Method in class eu.etaxonomy.cdm.api.service.statistics.Statistics
 
addCoveredTaxon(Taxon) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCredit(Credit) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addCredit(Credit, int) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addCredit(Credit) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addCredit(Credit, int) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addCriteria(Criteria, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addCriteria(AuditQuery, List<AuditCriterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
addCustomPattern(CoordinateConverter.CustomPatternIn) - Method in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter
 
addDefinition(LanguageString) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDefinition method instead
addDefinition(String, Language) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDefinition method instead
addDerivationEvent(DerivationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDerivative(DerivedUnitBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Adds a new output specimen or observation for this derviation event.
addDerivedUnitDefinition(String, Language) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDerivedUnitMedia(Media) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDescribedSpecimenOrObservation(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Adds an existing specimen or observation to the set of specimens or observations described in this description or which this description is based on.
Due to bidirectionality if this description is a specimen description, this description will also be added to the set of specimen descriptions corresponding to the given additional specimen or observation.
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDescription method instead
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDescription method instead
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDescription method instead
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putDescription method instead
addDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.description.WorkingSet
Adds an existing description to the set of descriptions of this working set.
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addDescription(TaxonNameDescription) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new taxon name description to the set of taxon name descriptions assigned to this taxon name.
addDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Adds a new description to this specimen or observation
addDescription(TaxonDescription) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds a new taxon description to the set of taxon descriptions assigned to this (accepted/correct) taxon.
addDescriptionElement(Taxon, ELEMENT) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
Adds a description element to the taxon's first description which is not an image gallery.
addDescriptionElement(Taxon, TextData) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportImageCreationMapper
 
addDescriptionSource(Reference) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Deprecated. 
addDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDoc(Document) - Method in class eu.etaxonomy.cdm.api.service.search.SearchResult
 
addDuplicate(Collection, String, String, TaxonNameBase, PreservationMethod) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Creates a duplicate specimen which derives from the same derivation event as the facade specimen and adds collection data to it (all data available in DerivedUnitBase and Specimen.
addDuplicate(DerivedUnitBase) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addElement(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Adds an existing elementary description to the set of elementary description data which constitute this description as a whole.
addEmailAddress(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addEmailAddress(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addErrorMessageToServletContextAttributes(String) - Method in class eu.etaxonomy.cdm.remote.config.AbstractWebApplicationConfigurer
 
addExample(Criteria, T, Set<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addException(Exception) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addExceptions(List<Exception>) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addExistingRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
addExistingRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
addExistingRecordUuid(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
addExistingRecordUuid(CdmBase) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
addExtension(String, String) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelRowBase
 
addExtension(String, ExtensionType) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addExtension(Extension) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addExtension(Extension) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addFaxNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addFaxNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addFeature(Feature) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Adds an existing feature to the set of descriptiveSystem used as features for this description.
addFeatureData(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the features in value to the feature data property list.
addFieldEntry(URI, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvMetaDataRecordRedlist
 
addFieldEntry(URI, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaMetaDataRecord
 
addFieldObjectDefinition(String, Language) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addFieldObjectMedia(Media) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addFieldToDocument(String, String, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.IdFieldOptions
 
addFieldToDocument(String, String, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.SortFieldOptions
 
addGenBankAccession(GenBankAccession) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addGeneralizationOf(T) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
addGeographicalScope(NamedArea) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeoScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Adds a named area to the set of named areas delimiting the geospatial area where this taxon description is valid.
addGrantedAuthority(GrantedAuthority) - Method in class eu.etaxonomy.cdm.model.common.Group
 
addGroupAuthority(String, GrantedAuthority) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
addGroupAuthority(String, GrantedAuthority) - Method in class eu.etaxonomy.cdm.api.service.UserService
Deprecated. 
addGroups(Criteria, List<Grouping>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addHeterotypicSynonymName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym and with the "is heterotypic synonym of" relationship type), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHeterotypicSynonymName(TaxonNameBase, HomotypicalGroup, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the "is heterotypic synonym of" relationship type and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHomotypicSynonym(Synonym, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym, with the "is homotypic synonym of" relationship type and with the reference source on which the relationship assertion is based), returns it and adds it to the set of synonym relationships assigned to this taxon.
addHomotypicSynonymName(TaxonNameBase, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the "is homotypic synonym of" relationship type) and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHybridChild(NonViralName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Creates a new hybrid relationship to this botanical name.
addHybridParent(NonViralName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Creates a new hybrid relationship to this botanical name.
addHybridRelationship(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Adds the given hybrid relationship to the set of hybrid relationships of both non-viral names involved in this hybrid relationship.
addImagePart(DescriptionElementBase) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
Deprecated. not used by EDITor anymore
addInapplicableState(State) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Adds an existing inapplicable state to the set of inapplicable states described in this feature node.
addIncludes(T) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
addInfraGenericPart(NonViralName<T>, List<TaggedText>, String, String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Default implementation for the infrageneric part of a name.
addInfraGenericPart(NonViralName<ZoologicalName>, List<TaggedText>, String, String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameNoMarkerCacheStrategy
 
addInstitutionalMembership(InstitutionalMembership) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
addInstitutionalMembership(Institution, TimePeriod, String, String) - Method in class eu.etaxonomy.cdm.model.agent.Person
Adds a new membership of this person in an institution to the set of his institution memberships.
addInverseRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
ADDITIONAL_PUBLICATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "additional_publication" feature.
addJsonElement(JSONObject, JsonConfig, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractBeanProcessor
 
addKey(UnmatchedLeads.UnmatchedLeadsKey, PolytomousKeyNode) - Method in class eu.etaxonomy.cdm.io.markup.UnmatchedLeads
Adds a polytomous key node to the
addKeyRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a key representation to the set of key representations corresponding to this identification key.
addKnownField(String, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
addKnownField(TermUri) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
addKnownField(String, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
addKnownField(TermUri) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
addLanguageData(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the features in value to the language data property list.
addLeveledArea(String, String) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenRow
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.CdmIoMapping
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportMapping
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.out.CollectionExportMapping
 
addMarker(Marker) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addMarker(Marker) - Method in interface eu.etaxonomy.cdm.model.common.IAnnotatableEntity
 
addMedia(Collection<T>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
Adds the media in value to the media property list.
addMedia(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the media in value to the media property list.
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Adds a media to the list of media this description element is based on.
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity
 
addMedia(Media) - Method in interface eu.etaxonomy.cdm.model.media.IMediaEntity
Adds a media to this object
addMediaToGallery(DescriptionBase, Media) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
 
addMember(User) - Method in class eu.etaxonomy.cdm.model.common.Group
 
addMember(CdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
addMetaRecord(CsvMetaDataRecordRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportStateRedlist
 
addMetaRecord(DwcaMetaDataRecord) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
addMisappliedName(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "misapplied name for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Adds a modifier to the set of modifiers used to qualify the validity of this description element.
addModifier(Modifier) - Method in interface eu.etaxonomy.cdm.model.description.IModifiable
Adds a modifier to the set of modifiers used to qualify the validity of this state data.
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StateData
Adds a modifier to the set of modifiers used to qualify the validity of this state data.
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Adds a modifier to the set of modifiers used to qualify the validity of this statistical measurement value.
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method instead
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method instead
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.StateData
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method instead
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.StateData
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method instead
addMultipleValues(List<Object>, CdmBase, String, List<Class>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addMyColumns() - Method in class eu.etaxonomy.cdm.database.update.MapTableCreator
 
addMyColumns() - Method in class eu.etaxonomy.cdm.database.update.MnTableCreator
 
addNameRelationship(NameRelationship) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds an existing name relationship either to the set of relations to this taxon name or to the set of relations from this taxon name.
addNameRelationships(String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addNamespace(String, Class<? extends IIdentifiableEntity>) - Method in class eu.etaxonomy.cdm.model.common.LSIDAuthority
 
addNameTypeDesignation(TaxonNameBase, Reference, String, String, NameTypeDesignationStatus, boolean, boolean, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates and adds a new name type designation to this taxon name's set of type designations.
addNameTypeDesignation(TaxonNameBase, Reference, String, String, NameTypeDesignationStatus, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates and adds a new name type designation to this taxon name's set of type designations.
addNewPairNN(List<NameValuePair>, String, String) - Static method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
addNewPairNN(List<NameValuePair>, String, Object) - Static method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
addNonMember(CdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
addNumericFieldToDocument(String, Object, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.IdFieldOptions
 
addNumericFieldToDocument(String, Object, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.SortFieldOptions
 
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
addObserver(IIoObserver) - Method in interface eu.etaxonomy.cdm.io.common.IIoObservable
Adds a new observer for this object.
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.ObservableBase
 
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
addObservers(Set<IIoObserver>) - Method in interface eu.etaxonomy.cdm.io.common.IIoObservable
Adds a set of new observer for this object.
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.common.ObservableBase
 
addOrder(FullTextQuery, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addOrder(Criteria, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addOrder(AuditQuery, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
addOrder(Criteria) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
addOrder(Criteria) - Method in class eu.etaxonomy.cdm.persistence.query.Grouping
 
addOriginal(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Adds a new input specimen or observation for this derviation event.
addOriginalSource(CdmBase, Object, String, Reference) - Method in class eu.etaxonomy.cdm.io.common.CdmImportBase
Adds an orginal source to a sourceable objects (implemented for Identifiable entity and description element.
addOriginalSource(ResultSet, CdmBase, String, String, Reference) - Method in class eu.etaxonomy.cdm.io.common.CdmImportBase
 
addOriginalSource(ResultSet, CREATE) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase
TODO also implemented in CdmImportBase (reduce redundance)
addOriginalSource(ResultSet, SUPPLEMENT) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
addOriginalSourceId - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
addOutputModule(IPublishOutputModule) - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
Adds an output modules to this configurators list of output modules.
addParentChild(Taxon, Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
Relates two taxa as parent-child nodes within a classification.
addParsingProblem(ParserProblem) - Method in interface eu.etaxonomy.cdm.model.common.IParsable
Adds a parsing problem to the list of parsing problems
addParsingProblem(ParserProblem) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
addParsingProblem(ParserProblem) - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
addParsingProblems(int) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
addPart(StatisticsPartEnum) - Method in class eu.etaxonomy.cdm.api.service.statistics.StatisticsConfigurator
 
addPart(int, StatisticsPartEnum) - Method in class eu.etaxonomy.cdm.api.service.statistics.StatisticsConfigurator
 
addPartialSynonym(Synonym) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator
 
addPhoneNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addPhoneNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addPlantDescription(String, DerivedUnitFacade) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeFieldObservationCacheStrategy
 
addProblem(int, ParserProblem) - Static method in enum eu.etaxonomy.cdm.strategy.parser.ParserProblem
 
addProblems(int, int) - Static method in enum eu.etaxonomy.cdm.strategy.parser.ParserProblem
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByCount
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.Grouping
 
addProParteSynonym(Synonym) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator
 
addPropertyChangeListener(PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(PropertyChangeListener)
addPropertyChangeListener(String, PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(String, PropertyChangeListener)
addProtocolHeader(String, String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidStandardPortImpl
Method addProtocolHeader.
addQuestionText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
This is a convenience method to sets the question text for this node in the given language.
addRecommendedMeasurementUnit(MeasurementUnit) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a statistical measure to the set of recommended statistical measures assigned to this feature.
addRecommendedModifierEnumeration(TermVocabulary<Modifier>) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a term vocabulary (with modifiers) to the set of recommended modifier vocabularies assigned to this feature.
addRecommendedStatisticalMeasure(StatisticalMeasure) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a statistical measure to the set of recommended statistical measures assigned to this feature.
addReference(Reference) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
addReferencedEntities(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the referenced entities in value to the referenced entity property list.
addRelatedObject(CdmBase) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addRelatedObject(Object, String, CdmBase) - Method in class eu.etaxonomy.cdm.io.common.DbImportStateBase
 
addRelatedObject(Object, String, CdmBase) - Method in interface eu.etaxonomy.cdm.io.common.IPartitionedState
 
addRelatedObject(String, String, IdentifiableEntity<?>) - Method in class eu.etaxonomy.cdm.io.dwca.in.DwcaImportState
 
addRelatedObjects(Set<? extends CdmBase>) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addRelatedObjet(Object, String, CdmBase) - Method in class eu.etaxonomy.cdm.io.common.RelatedObjectsHelper
Adds a related object to the underlying map.
addRelationship(T) - Method in interface eu.etaxonomy.cdm.model.common.IRelated
 
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Deprecated. to be used by RelationshipBase only
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Does exactly the same as the addNameRelationship method provided that the given relationship is a name relationship.
addRelationship(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Adds an existing synonym relationship to the set of synonym relationships assigned to this synonym.
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Deprecated. 
addRelationshipFromName(TaxonNameBase, NameRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from another taxon name to this taxon name and adds it both to the set of relations to this taxon name and to the set of relations from the other taxon name.
addRelationshipFromName(TaxonNameBase, NameRelationshipType, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from another taxon name to this taxon name and adds it both to the set of relations to this taxon name and to the set of relations from the other taxon name.
addRelationships(Collection<? extends RelationshipBase>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the relationship in value to the relationships property list.
addRelationshipToName(TaxonNameBase, NameRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addRelationshipToName(TaxonNameBase, NameRelationshipType, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addReplacedSynonym(T, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a taxon name as replaced synonym of this taxon name and keeps the nomenclatural rule considered for it.
addRepresentation(Representation, Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.description.WorkingSet
 
addRepresentation(MediaRepresentation) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addRepresentationPart(MediaRepresentationPart) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
Address - Class in eu.etaxonomy.cdm.model.agent
This class represents atomized postal addresses.
addresses - Variable in class eu.etaxonomy.cdm.model.agent.Contact
 
addRights(Rights) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addRights(Rights) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addRule(TagEnum, String) - Method in class eu.etaxonomy.cdm.strategy.cache.HTMLTagRules
 
addSchemaAdapter(SchemaAdapterBase) - Method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
addScope(Scope) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Adds a scope (mostly a life stage or a sex) to the set of scopes restricting the validity of this taxon description.
addScopeRestriction(Scope) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addScopeRestriction(Scope) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addScopeRestriction(Scope) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addScopeRestriction(Scope) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addSelectedTaxonNodeElements(Element) - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
Add a taxon node element to list of taxon nodes that will be processed by the print publisher.
addSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
Subclasses should override this method and add a collection of eu.etaxonomy.cdm.remote.dto.oaipmh.Set objects called "sets" that will be returned in the response
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.ReferenceOaiPmhController
 
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.TaxonOaiPmhController
 
addSource(IdentifiableSource) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addSource(Reference, String, String) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Creates an orignal source, adds it to the specimen and returns it.
addSource(IdentifiableSource) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addSource(String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addSource(T) - Method in interface eu.etaxonomy.cdm.model.common.ISourceable
Adds a source to this object
addSource(String, String, Reference, String) - Method in interface eu.etaxonomy.cdm.model.common.ISourceable
Adds a source that is newly created by its components.
addSource(DescriptionElementSource) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSource(String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSource(String, String, Reference, String, TaxonNameBase, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSpecimenTypeDesignation(Specimen, SpecimenTypeDesignationStatus, Reference, String, String, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates and adds a new specimen type designation to this taxon name's set of type designations.
addSpecimenTypeDesignation(SpecimenTypeDesignation) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
addState(StateData) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Adds a state to the list of states describing the feature corresponding to this categorical data.
addState(State) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Convenience method which creates a state data from a given state with no modifiers and adds it to the list of state data
addStatementText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
This is a convenience method to set the statement text for this node in the given language.
addStatisticalValue(StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
Adds a statistical measurement value to the set of statistical measurement values describing the feature corresponding to this quantitative data.
addStatus(NomenclaturalStatus) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new nomenclatural status to this taxon name's set of nomenclatural status.
addStringValue(ResultSet, CdmBase, String, String, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addSuperView(View) - Method in class eu.etaxonomy.cdm.model.view.View
 
addSupplement(Annotation, AnnotatableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationCreationMapper
 
addSupplement(Extension, IdentifiableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionCreationMapper
 
addSupplement(Marker, AnnotatableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportMarkerCreationMapper
 
addSupplement(SUPPLEMENT, SUPPLEMENTABLE, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
Adds the supplement to the supplementable entity.
addSupportedCategoricalEnumeration(TermVocabulary<State>) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a term vocabulary to the set of supported state vocabularies assigned to this feature.
addSynonym(Synonym) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the synonym in value to the taxa property list.
addSynonym(Synonym, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym and with the given synonym relationship type), returns it and adds it to the set of synonym relationships assigned to this taxon.
addSynonym(Synonym, SynonymRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym, with the given synonym relationship type and with the reference source on which the relationship assertion is based), returns it and adds it to the set of synonym relationships assigned to this taxon.
addSynonymName(TaxonNameBase, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym and with the given synonym relationship type), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addSynonymName(TaxonNameBase, SynonymRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the given synonym relationship type and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Adds an existing synonym relationship to the set of synonym relationships assigned to this synonym.
addSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds an existing synonym relationship to the set of synonym relationships assigned to this taxon.
addSynonyms(Collection<Synonym>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the synonym in value to the synonyms property list.
addTaxa(Collection<Taxon>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the taxa in value to the taxa property list.
addTaxon(Taxon) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
Adds the taxon in value to the taxa property list.
addTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
Adds the taxonBase in value to the taxonBases property list.
addTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new taxon base to the set of taxon bases using this taxon name.
addTaxonBases(Collection<TaxonBase>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
Adds the taxonBases in value to the taxonBases property list.
addTaxonImage(Taxon, DescriptionBase<?>, ImageFile) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
Deprecated. not used by EDITor anymore
addTaxonNode(TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
addTaxonomicChild(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Deprecated. 
addTaxonomicScope(Taxon) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonRelation(TaxonRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds an existing taxon relationship either to the set of taxon relationships to this taxon or to the set of taxon relationships from this taxon.
addTaxonRelation(Taxon, TaxonRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship instance where this taxon plays the source role and adds it to the set of "taxon relationships from" belonging to this taxon.
addTdwgArea(NamedArea) - Static method in class eu.etaxonomy.cdm.model.location.TdwgArea
 
addTeamMember(Person) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the end of the members' list.
addTeamMember(Person, int) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the given index place of the members' list.
addTerm(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
Adds a term to the the end / lowest
addTerm(T) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
addTermAbove(T, T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addTermBelow(T, T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addTermEqualLevel(T, T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addThing(BaseThing) - Method in class eu.etaxonomy.remote.dto.rdf.Rdf
 
addTitle(LanguageString) - Method in class eu.etaxonomy.cdm.model.media.Media
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putTitle method instead
addTitle(String, Language) - Method in class eu.etaxonomy.cdm.model.media.Media
Deprecated. should follow the put semantic of maps, this method will be removed in v4.0 Use the putTitle method instead
addToAcceptedTaxontUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToCycleSet(Object) - Method in class net.sf.json.CycleSetAcess
 
addToNameUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToNomenclatureStaus(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addToRelatedTaxa(String, String, String, String, String, String, String, String, String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.TaxonInformation.TaxonInformationResponse
 
addToResponseList(String, String, String, Map<String, Map>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch
 
addToResponseList(String, String, float, String, Set<TaxonBase>, Set<TaxonBase>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch
 
addToResponseRelatedTaxa(String, String, String, String, String, String, String, String, String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.TaxonInformation
 
addToResponseTaxonInfo(Set<TaxonBase>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation
 
addToTaxonConceptUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToTaxonLsids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addToTaxonUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addType(StatisticsTypeEnum) - Method in class eu.etaxonomy.cdm.api.service.statistics.StatisticsConfigurator
 
addType(InstitutionType) - Method in class eu.etaxonomy.cdm.model.agent.Institution
Adds a new institutional type (from the corresponding vocabulary) to the set of institution types of this institution.
addTypeDesignation(TypeDesignationBase, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a type designation to this taxon name's set of type designations
addTypeDesignations(List<TypeDesignationBase>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
Sets the value of the typeDesignations property.
addTypifiedName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Adds a new taxon name to the set of taxon names that belong to this homotypical group.
addTypifiedName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Deprecated. for bidirectional use only
addUrl(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addUrl(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addUsedSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
addUser(User) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addUserToGroup(String, String) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
addUserToGroup(String, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
Deprecated. 
addValue(ResultSet, CdmBase, String, String, Class, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addValue(Object, CdmBase, String, Class<?>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addWaterbodyOrCountry(WaterbodyOrCountry) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
addWorkingSet(WorkingSet) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addXmlBooleanValue(Element, CdmBase, String, Namespace, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlStringValue(Element, CdmBase, String, Namespace, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlStringValue(Element, CdmBase, String, Namespace, String, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlValue(Element, CdmBase, String, Namespace, String, Class, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlValue(Element, CdmBase, String, Namespace, String, Class, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addYear(String, T, boolean) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
addYear(String, T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.ReferenceBaseDefaultCacheStrategy
 
ADMIN - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
adminEmail - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
ADMINISTRATION_AREA() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
The boundaries depend on administration (county, state, reserve, etc.)
adminLogin - Static variable in class eu.etaxonomy.cdm.config.Configuration
Login name for the first user 'admin'
adminPassword - Static variable in class eu.etaxonomy.cdm.config.Configuration
Default password for the first user 'admin'
ADVANCED_NAME_SERVICE_URL - Static variable in interface eu.etaxonomy.cdm.ext.ipni.IIpniService
 
ADYGHE_ADYGEI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFAR() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFFINIS() - Static method in class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
 
AFGHANISTAN() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AFRICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
AFRIHILI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFRIKAANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFRO_ASIATIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.ReferenceBaseDefaultCacheStrategy
 
afterCompletion(HttpServletRequest, HttpServletResponse, Object, Exception) - Method in class eu.etaxonomy.cdm.remote.controller.interceptor.DatasourceContextHandlerInterceptor
Deprecated.  
afterLast() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.database.UpdatableRoutingDataSource
Deprecated.  
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.remote.config.LoggingConfigurer
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.remote.dto.assembler.DozerBeanMapperFactoryBean
 
afterTransactionCompletion(Transaction) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmHibernateInterceptor
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.ReferenceBaseDefaultCacheStrategy
 
AGENT_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
AgentBase<S extends IIdentifiableEntityCacheStrategy> - Class in eu.etaxonomy.cdm.model.agent
The upmost (abstract) class for agents such as persons, teams or institutions.
AgentBase() - Constructor for class eu.etaxonomy.cdm.model.agent.AgentBase
 
AgentController - Class in eu.etaxonomy.cdm.remote.controller
The AgentController class is a Spring MVC Controller.
AgentController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AgentController
 
AgentDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.agent
 
AgentDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.agent.AgentDaoImpl
 
agentData - Variable in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
AgentListController - Class in eu.etaxonomy.cdm.remote.controller
The AgentListController class is a Spring MVC Controller.
AgentListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AgentListController
 
agents - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
agents - Variable in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
AgentServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
AgentServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.AgentServiceImpl
Constructor
aggregateDistributions(List<NamedArea>, Rank, Rank) - Method in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
aggrOrGroup - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
aggrOrGroupMarker - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
aggrOrGroupPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AINU() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AKAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AKKADIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALBANIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALBANIAPEOPLESSOCIALISTREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ALEUT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALGERIAPEOPLESDEMOCRATICREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ALGONQUIANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALL - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
ALL_RELATIONSHIPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
allABCDelements - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
allowsSecondNull(Object) - Method in enum eu.etaxonomy.cdm.strategy.match.MatchMode
 
allowWhiteSpace - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
ALTAIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALTERNATIVE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "alternative".
ALTERNATIVE_ABBREVIATIONS - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
ALTERNATIVE_NAME() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "alternative name" name relationship type.
ALTERNATIVE_NAMES - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
AlternativeSpellingSuggestionParser<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate
Deprecated. Use current methods for alternative spelling suggestions. This class is no longer supported after migration to hibernate 4.x.
AlternativeSpellingSuggestionParser(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.AlternativeSpellingSuggestionParser
Deprecated.  
AlternativeTreeRoot - Class in eu.etaxonomy.cdm.model.taxon
 
AlternativeTreeRoot(TaxonNode, TaxonNode, Reference, String) - Constructor for class eu.etaxonomy.cdm.model.taxon.AlternativeTreeRoot
 
ALTITUDE - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
altitude - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
altitude - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
AMBIGUOUS() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "ambiguous".
AMERICANSAMOA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AMHARIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
analyzeFeatures(STATE, ExcelTaxonOrSpecimenImportBase<STATE, ROW>.KeyValue) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
analyzeRecord(HashMap<String, String>, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase
 
analyzeRecord(HashMap<String, String>, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
analyzeRecord(HashMap<String, String>, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.ExtensionTypeExcelImport
 
analyzeRecord(HashMap<String, String>, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.NamedAreaLevelExcelImport
 
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<STATE, ROW>.KeyValue, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
Analyzes a single record value and fills the row instance accordingly.
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<TaxonExcelImportState, NormalExplicitRow>.KeyValue, TaxonExcelImportState) - Method in class eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImport
 
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<SpecimenCdmExcelImportState, SpecimenRow>.KeyValue, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImport
 
ANATOMY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "anatomy" feature.
ANDORRAPRINCIPALITYOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ANGIKA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ANGOLAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ANGUILLA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AnnotatableDaoImpl<T extends AnnotatableEntity> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
AnnotatableDaoImpl(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl
 
AnnotatableEntity - Class in eu.etaxonomy.cdm.model.common
Abstract superclass implementing human annotations and machine markers to be assigned to CDM objects.
AnnotatableEntity() - Constructor for class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
AnnotatableServiceBase<T extends AnnotatableEntity,DAO extends IAnnotatableDao<T>> - Class in eu.etaxonomy.cdm.api.service
 
AnnotatableServiceBase() - Constructor for class eu.etaxonomy.cdm.api.service.AnnotatableServiceBase
 
ANNOTATION - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
Annotation - Class in eu.etaxonomy.cdm.model.common
 
Annotation() - Constructor for class eu.etaxonomy.cdm.model.common.Annotation
 
Annotation(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Annotation
Constructor
AnnotationDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
AnnotationDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotationDaoImpl
 
annotations - Variable in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
AnnotationService - Class in eu.etaxonomy.cdm.api.service
 
AnnotationService() - Constructor for class eu.etaxonomy.cdm.api.service.AnnotationService
 
AnnotationType - Class in eu.etaxonomy.cdm.model.common
Annotation types ...
AnnotationType() - Constructor for class eu.etaxonomy.cdm.model.common.AnnotationType
Constructor
AnnotationType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.AnnotationType
Constructor
AnnotationTypeAutoInitializer - Class in eu.etaxonomy.cdm.persistence.dao
 
AnnotationTypeAutoInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.AnnotationTypeAutoInitializer
 
ANTARCTICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
ANTARCTICASOUTHOF60() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ANTIGUAANDBARBUDA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.About
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Description
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Metadata
 
anyBotanicFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyBotanicFullNamePattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyBotanicName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyEnd - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anySepChar - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooFullNamePattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
APACHES() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
appContext - Variable in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
appContext - Variable in class eu.etaxonomy.cdm.api.service.ServiceBase
 
applicationContext - Variable in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
applicationContext - Variable in class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration
 
applicationContext - Variable in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
 
applicationContext - Variable in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
apply(Object, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.util.CardinalityPropertyFilter
 
apply(Object, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.util.InitializedHibernatePropertyFilter
 
applySubstitutionRules(String) - Method in class eu.etaxonomy.cdm.model.common.AbstractStringComparator
Applies the first matching substitutionRules set by #setSubstitutionRules() to the given String.
ARABIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAGONESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAPAHO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAWAK() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Archive - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Archive() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Archive
 
ArchiveEntryBase - Class in eu.etaxonomy.cdm.io.dwca.jaxb
 
ArchiveEntryBase() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.ArchiveEntryBase
 
ARCTICOCEAN() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AREA_OF_INTREREST() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 
areBlank(String...) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
 
areMatch(Object, Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerDuplicationStrategy
 
ARGENTINAARGENTINEREPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ARMENIA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ARMENIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AROMANIAN_ARUMANIAN_MACEDOROMANIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ArticleDefaultCacheStrategy<T extends Reference> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
ARTIFICIAL_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARUBA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
asc(String, String) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
asGrantedAuthority(IGrantedAuthorityDao) - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.Role
WARNING: This method must only be used when there is nothing in hibernate to be flushed to the database.
ASIA_TEMPERATE() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
ASIA_TROPICAL() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
asNewGrantedAuthority() - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
asNewGrantedAuthority() - Method in interface eu.etaxonomy.cdm.persistence.hibernate.permission.IGrantedAuthorityConverter
 
asNewGrantedAuthority() - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.Role
 
ASSAMESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
assemble(Serializable, Object) - Method in class eu.etaxonomy.cdm.hibernate.WSDLDefinitionUserType
 
asSet() - Method in class eu.etaxonomy.cdm.remote.editor.UuidList
 
associatedMedia - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedOccurrences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedReferences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedSequences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedTaxa - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associateImageWithCdmBase(String, CdmBase) - Method in class eu.etaxonomy.cdm.io.sdd.in.SDDDataSetImport
 
associateImageWithCdmBase(String, CdmBase) - Method in class eu.etaxonomy.cdm.io.sdd.in.SDDImport
 
ASTURIAN_BABLE_LEONESE_ASTURLEONESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ATHAPASCANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ATLANTICOCEAN() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
atomisedIdentificationList - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
atomisedStr - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
ATTRIBUTE_DATASOURCE_NAME - Static variable in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
Attribute to configure the name of the data source as set as bean name in the datasources.xml.
ATTRIBUTE_JDBC_JNDI_NAME - Static variable in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
AudioFile - Class in eu.etaxonomy.cdm.model.media
 
AudioFile() - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
Constructor
AudioFile(URI, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
Constructor
AudioInfo - Class in eu.etaxonomy.cdm.common.media
 
AudioInfo() - Constructor for class eu.etaxonomy.cdm.common.media.AudioInfo
 
AuditEvent - Class in eu.etaxonomy.cdm.model.view
 
AuditEvent() - Constructor for class eu.etaxonomy.cdm.model.view.AuditEvent
 
AuditEventContext - Interface in eu.etaxonomy.cdm.model.view.context
 
AuditEventContextHolder - Class in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextHolder, part of spring-security, but instead binding a AuditEvent object to the context.
AuditEventContextHolder() - Constructor for class eu.etaxonomy.cdm.model.view.context.AuditEventContextHolder
 
AuditEventContextHolderStrategy - Interface in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextHolderStrategy, part of spring-security, but instead binding a View object to the context.
AuditEventContextImpl - Class in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextImpl, part of spring-security, but instead binding a View object to the context.
AuditEventContextImpl() - Constructor for class eu.etaxonomy.cdm.model.view.context.AuditEventContextImpl
 
AuditEventDao - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.view
 
AuditEventDao() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.view.AuditEventDao
 
AuditEventRecord<T extends CdmBase> - Interface in eu.etaxonomy.cdm.model.view
 
AuditEventRecordImpl<T extends CdmBase> - Class in eu.etaxonomy.cdm.model.view
 
AuditEventRecordImpl(Object[]) - Constructor for class eu.etaxonomy.cdm.model.view.AuditEventRecordImpl
 
AuditEventService - Class in eu.etaxonomy.cdm.api.service
 
AuditEventService() - Constructor for class eu.etaxonomy.cdm.api.service.AuditEventService
 
auditEventService - Variable in class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
 
AuditEventSort - Enum in eu.etaxonomy.cdm.persistence.dao.common
 
AUSTRALASIA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
AUSTRALIACOMMONWEALTHOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AUSTRALIANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AUSTRIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
AUSTRONESIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
authenticate(String, String) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
authenticate(String, String) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration
 
authenticate(String, String) - Method in interface eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration
 
authenticate(IImportConfigurator) - Method in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
authenticateAsDefaultAdmin() - Method in interface eu.etaxonomy.cdm.io.common.IIoConfigurator
Creates the UsernamePasswordAuthenticationToken for the default admin.
authenticateAsDefaultAdmin() - Method in class eu.etaxonomy.cdm.io.common.IoConfiguratorBase
 
author(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses an authorTeam String and returns the Team !!! TODO (atomization not yet implemented)
author - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTHOR_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImporterBase
 
AUTHOR_SERVICE_URL - Static variable in interface eu.etaxonomy.cdm.ext.ipni.IIpniService
 
authorAndExTeam - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
authorFirstName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
AUTHORITY_ID_PREFIX - Static variable in class eu.etaxonomy.cdm.model.common.LSIDAuthority
 
AuthorityController - Class in eu.etaxonomy.cdm.remote.service
Controller which accepts incoming requests to the LSIDAuthorityService This controller has three methods.
AuthorityController() - Constructor for class eu.etaxonomy.cdm.remote.service.AuthorityController
 
authorLastName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorNameCorporation - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorPart - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTHORS - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
AUTHORS_ROLE - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
authorsAndEx(String, TeamOrPersonBase<?>[], Integer[]) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses the author and ex-author String
authorSeparatorMaxPosition - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
authorTeam - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AuthorYearSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
AUTOMATIC() - Static method in class eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus
Returns the "automatic" name type designation status.
If a new name has to be established for a genus name this new name automatically gets the same type species as the old name.
autonym - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
autonym2 - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
autonymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AutoPropertyInitializer<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao
 
AutoPropertyInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.AutoPropertyInitializer
 
AVARIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AVERAGE() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
AVESTAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AWADHI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AYMARA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AZERBAIJANI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AZERBAIJANREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 

B

BacterialName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for bacteria.
BacterialName() - Constructor for class eu.etaxonomy.cdm.model.name.BacterialName
 
BacterialName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BacterialName
Class constructor: creates a new bacterial taxon name instance only containing its rank, its homotypical group and the default cache strategy.
BacterialNameDefaultCacheStrategy<NAME extends BacterialName> - Class in eu.etaxonomy.cdm.strategy.cache.name
The bacterial name default cache strategy.
BacterialNameDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.name.BacterialNameDefaultCacheStrategy
 
BadResumptionTokenException - Exception in eu.etaxonomy.cdm.remote.controller
 
BadResumptionTokenException() - Constructor for exception eu.etaxonomy.cdm.remote.controller.BadResumptionTokenException
 
BAHAMASCOMMONWEALTHOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BAHRAINKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BALINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BALTIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BALUCHI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BAMBARA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BAMILEKES() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BANDAS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BANGLADESHPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BANTU_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BARBADOS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BASA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
baseClass - Variable in class eu.etaxonomy.cdm.remote.controller.BaseController
 
BaseController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
based on org.cateproject.controller.common
BaseController() - Constructor for class eu.etaxonomy.cdm.remote.controller.BaseController
 
BaseListController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
BaseListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.BaseListController
 
basEnd - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BaseThing - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
BaseThing() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.BaseThing
 
BaseThing.PublishedInCitation - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
BaseThing.PublishedInCitation() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.BaseThing.PublishedInCitation
 
BaseThing.PublishedInCitation(PublicationCitation, boolean) - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.BaseThing.PublishedInCitation
 
baseUrl - Variable in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
baseUrl - Static variable in class eu.etaxonomy.cdm.remote.controller.ext.ExternalBhleController
 
baseURL - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
BaseView - Class in eu.etaxonomy.cdm.remote.view
 
BaseView() - Constructor for class eu.etaxonomy.cdm.remote.view.BaseView
 
BASHKIR() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BASIONYM - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
BASIONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "basionym" name relationship type.
BASIONYM_AUTHOR - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
basionymAuthor - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BasionymAuthorCombinationAuthorSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
BasionymEnd - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
basionymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BasionymsMustShareEpithetsAndAuthors - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
BasionymsMustShareEpithetsAndAuthorsValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
BasionymsMustShareEpithetsAndAuthorsValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.BasionymsMustShareEpithetsAndAuthorsValidator
 
BasionymStart - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
basisOfRecord - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BASQUE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
basStart - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BATAKS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BciSchemaAdapter - Class in eu.etaxonomy.cdm.ext.bci
 
BciSchemaAdapter() - Constructor for class eu.etaxonomy.cdm.ext.bci.BciSchemaAdapter
 
BciServiceWrapper - Class in eu.etaxonomy.cdm.ext.bci
This service allows to query the Biodiversity collection index http://www.biodiversitycollectionsindex.org
BciServiceWrapper() - Constructor for class eu.etaxonomy.cdm.ext.bci.BciServiceWrapper
 
beanDefinitionFile - Static variable in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
beanInitializer - Variable in class eu.etaxonomy.cdm.persistence.dao.AutoPropertyInitializer
 
bed - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
beforeFirst() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
beforeMarshal(Object) - Method in class eu.etaxonomy.cdm.io.jaxb.CdmMarshallerListener
 
beforeMicroReference - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.ReferenceBaseDefaultCacheStrategy
 
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor
 
beginTask(String, int) - Method in interface eu.etaxonomy.cdm.common.monitor.IProgressMonitor
Notifies that the main task is beginning.
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.NullProgressMonitor
 
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.ProgressMonitorWrapper
This implementation of a IProgressMonitor method forwards to the wrapped progress monitor.
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.SubProgressMonitor
 
behavior - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BEJA_BEDAWIYET() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BELARUS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BELGIUMKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BELIZE() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BELORUSSIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BEMBA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BENGALI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BENINPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BERBER_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BerlinModelAuthorExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelAuthorExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorExport
 
BerlinModelAuthorImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
Supported attributes: - AuthorId, Abbrev, FirstName, LastName, Dates, AreaOfInterest, NomStandard, createUpdateNotes
BerlinModelAuthorImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelAuthorImport
 
BerlinModelAuthorImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelAuthorImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelAuthorImportValidator
 
BerlinModelAuthorTeamExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelAuthorTeamExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorTeamExport
 
BerlinModelAuthorTeamImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelAuthorTeamImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelAuthorTeamImport
 
BerlinModelAuthorTeamImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelAuthorTeamImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelAuthorTeamImportValidator
 
BerlinModelClassificationExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelClassificationExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelClassificationExport
 
BerlinModelCommonNamesImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelCommonNamesImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelCommonNamesImport
 
BerlinModelCommonNamesImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelCommonNamesImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelCommonNamesImportValidator
 
BerlinModelExportBase<T extends CdmBase> - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelExportBase() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelExportBase
 
BerlinModelExportConfigurator - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelExportState - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelExportState(BerlinModelExportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelExportState
 
BerlinModelFactExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelFactExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelFactExport
 
BerlinModelFactsImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelFactsImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelFactsImport
 
BerlinModelFactsImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelFactsImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelFactsImportValidator
 
BerlinModelGeneralImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
For validating general consistencies like existence of tables, etc.
BerlinModelGeneralImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelGeneralImportValidator
 
BerlinModelImportBase - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelImportBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase
 
BerlinModelImportConfigurator - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelImportConfigurator(Source, ICdmDataSource) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator
 
BerlinModelImportState - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelImportState(BerlinModelImportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState
 
BerlinModelNameFactsImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelNameFactsImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelNameFactsImport
 
BerlinModelNameFactsImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelNameFactsImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelNameFactsImportValidator
 
BerlinModelNameRelationExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelNameRelationExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelNameRelationExport
 
BerlinModelNameStatusImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelNameStatusImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelNameStatusImport
 
BerlinModelNameStatusImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelNameStatusImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelNameStatusImportValidator
 
BerlinModelOccurrenceImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelOccurrenceImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelOccurrenceImport
 
BerlinModelOccurrenceImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelOccurrenceImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelOccurrenceImportValidator
 
BerlinModelOccurrenceSourceImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelOccurrenceSourceImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelOccurrenceSourceImport
 
BerlinModelOccurrenceSourceImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelOccurrenceSourceImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelOccurrenceSourceImportValidator
 
BerlinModelRefDetailImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
This class imports all preliminary refdetails as generic references.
BerlinModelRefDetailImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelRefDetailImport
 
BerlinModelRefDetailImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelRefDetailImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelRefDetailImportValidator
 
BerlinModelReferenceExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelReferenceExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelReferenceExport
 
BerlinModelReferenceImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelReferenceImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
BerlinModelReferenceImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelReferenceImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelReferenceImportValidator
 
BerlinModelTaxonExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelTaxonExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonExport
 
BerlinModelTaxonImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelTaxonImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonImport
 
BerlinModelTaxonImport.PublishMarkerChooser - Enum in eu.etaxonomy.cdm.io.berlinModel.in
How should the publish flag in table PTaxon be interpreted NO_MARKER: No marker is set ONLY_FALSE:
BerlinModelTaxonImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelTaxonImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelTaxonImportValidator
 
BerlinModelTaxonNameExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelTaxonNameExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonNameExport
 
BerlinModelTaxonNameImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelTaxonNameImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonNameImport
 
BerlinModelTaxonNameImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelTaxonNameImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelTaxonNameImportValidator
 
BerlinModelTaxonNameRelationImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelTaxonNameRelationImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonNameRelationImport
 
BerlinModelTaxonNameRelationImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelTaxonNameRelationImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelTaxonNameRelationImportValidator
 
BerlinModelTaxonRelationExport - Class in eu.etaxonomy.cdm.io.berlinModel.out
 
BerlinModelTaxonRelationExport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonRelationExport
 
BerlinModelTaxonRelationImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelTaxonRelationImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonRelationImport
 
BerlinModelTaxonRelationImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelTaxonRelationImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelTaxonRelationImportValidator
 
BerlinModelTransformer - Class in eu.etaxonomy.cdm.io.berlinModel
 
BerlinModelTransformer() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer
 
BerlinModelTypesImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelTypesImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTypesImport
 
BerlinModelTypesImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelTypesImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelTypesImportValidator
 
BerlinModelUserImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelUserImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelUserImport
 
BerlinModelUserImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelUserImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelUserImportValidator
 
BerlinModelWebMarkerCategoryImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelWebMarkerCategoryImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelWebMarkerCategoryImport
 
BerlinModelWebMarkerCategoryImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelWebMarkerCategoryImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelWebMarkerCategoryImportValidator
 
BerlinModelWebMarkerImport - Class in eu.etaxonomy.cdm.io.berlinModel.in
 
BerlinModelWebMarkerImport() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelWebMarkerImport
 
BerlinModelWebMarkerImportValidator - Class in eu.etaxonomy.cdm.io.berlinModel.in.validation
 
BerlinModelWebMarkerImportValidator() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelWebMarkerImportValidator
 
BERMUDA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
bhlPageURI - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
bhlTitleURI - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
BHOJPURI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BHUTANKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BIBLIO_REFDETAIL_NAMESPACE - Static variable in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelRefDetailImport
 
BIBLIO_REFERENCE_NAMESPACE - Static variable in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
bibliographicCitation - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BIHARI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BIKOL() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
bind() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
This method has to be called when starting a new unit-of-work.
bind(String, Object) - Method in class eu.etaxonomy.cdm.io.jaxb.CdmIDResolver
 
BINI_EDO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BIOLOGY_ECOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "biology_ecology" feature.
BIOVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
BISLAMA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLACKSEA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BLIN_BILIN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLIS_SYMBOLS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLOCKING_NAME_FOR() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "blocking name" name relationship type.
BOLD - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
BOLIVIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BookDefaultCacheStrategy<T extends Reference> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
BookSectionDefaultCacheStrategy<T extends Reference> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
bookTitle - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
BOSNIAANDHERZEGOVINA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BOSNIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BotanicalName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for plants and fungi.
BotanicalName() - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance only containing the default cache strategy.
BotanicalName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance only containing its rank, its homotypical group and the default cache strategy.
BotanicalName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
botanicBasionymAuthor - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
botanicBasionymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BotanicNameDefaultCacheStrategy<T extends BotanicalName> - Class in eu.etaxonomy.cdm.strategy.cache.name
T
BotanicNameDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
 
BOTSWANAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BOUVETISLAND() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BPH_NUMBER - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
BR - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
BRAJ() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BRAZILFEDERATIVEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BRETON() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BRITISHINDIANOCEANTERRITORY() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BRITISHVIRGINISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BRUNEIDARUSSALAM() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BUGINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
build(CategoricalData, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractCategoricalDescriptionBuilder
 
build(QuantitativeData, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractQuantitativeDescriptionBuilder
 
build(T, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionBuilder
Returns the TextData element with the description of the according DescriptionElement
buildAgents(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Agents associated with the Dataset
buildBranches(FeatureNode, ElementImpl, boolean) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildCategorical(ElementImpl, CategoricalData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Categorical associated with a SummaryData
buildCharacters(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Characters associated with the Dataset
buildCharacterTrees(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildClassifications(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildCodedDescriptions(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildContent(ElementImpl, LanguageString) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Content associated with a TextChar
buildDataset(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildDateModified(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds ModifiedDate associated with RevisionData
buildDescriptiveConcepts(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildDocument() - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds the whole document.
builder - Variable in class eu.etaxonomy.cdm.print.XmlEntityFactoryBase
The SAXBuilder used to parse the results from cdmlib-remote API calls
buildFeature(Feature, boolean) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatCategoricalDescriptionBuilder
 
buildFeature(Feature, boolean) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatQuantitativeDescriptionBuilder
 
buildGeographicAreas(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildIPRStatements(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds IPRStatements associated with the Dataset
buildLabel(ElementImpl, String) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Creates a Label element
buildList(String) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Builds a list of strings by splitting an input string with delimiters whitespace, comma, or semicolon
buildMeasure(ElementImpl, StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Measure associated with a Quantitative
buildMediaObjects(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildPublications(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildQuantitative(ElementImpl, QuantitativeData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Quantitative associated with a SummaryData
buildRefAgent(ElementImpl, TeamOrPersonBase, String) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds an element Agent referring to Agent defined later in the SDD file
buildReference(VersionableEntity, Map, String, ElementImpl, String, int) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildRepresentation(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using a Reference
buildRepresentation(ElementImpl, TermBase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using a Feature
buildRepresentation(ElementImpl, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using an IdentifiableEntity
buildRevisionData(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds RevisionData associated with the Dataset
buildScope(ElementImpl, TaxonDescription) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Scope associated with a CodedDescription
buildSpatialQueryByRange(Rectangle, String) - Static method in class eu.etaxonomy.cdm.api.service.search.QueryFactory
Returns a Lucene Query which rely on double numeric range query on Latitude / Longitude (+/- copied from SpatialQueryBuilderFromPoint.buildSpatialQueryByRange(Point, double, String))
buildSpecimens(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildState(ElementImpl, State) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds State associated with a Categorical
buildSummaryData(ElementImpl, TaxonDescription) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds SummaryData associated with a CodedDescription
buildTaxonNames(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TaxonNames associated with the Dataset
buildTechnicalMetadata(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TechnicalMetadata associated with the SDD file
buildTextChar(ElementImpl, TextData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TextChar associated with a SummaryData
buildTextDataFeature(Feature, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionBuilder
Returns a TextData with the name of the feature.
BULGARIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BULGARIAPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BURIAT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BURKINAFASO() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
BURMESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BURUNDIREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
bySpec(String) - Static method in enum eu.etaxonomy.cdm.remote.dto.oaipmh.SetSpec
 

C

CacheMatcher - Class in eu.etaxonomy.cdm.strategy.match
 
cacheStrategy - Variable in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
CacheStrategyGenerator - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CacheStrategyGenerator() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator
 
CacheUpdate - Annotation Type in eu.etaxonomy.cdm.strategy.cache.name
 
CacheUpdater - Class in eu.etaxonomy.cdm.io.common
 
CacheUpdater() - Constructor for class eu.etaxonomy.cdm.io.common.CacheUpdater
 
CacheUpdaterConfigurator - Class in eu.etaxonomy.cdm.io.common
 
CADDO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
calculateNumberOfNodes() - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
FIXME this is a dummy implementation
CalendarJSONValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
 
CalendarJSONValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.CalendarJSONValueProcessor
 
calendarToPartial(Calendar) - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
Transforms a Calendar into a Partial
CAMBODIAKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CAMEROONUNITEDREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CANADA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
canBeLat - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
cancelRowUpdates() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
CANDIDATE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CannotDisseminateFormatException - Exception in eu.etaxonomy.cdm.remote.exception
 
CannotDisseminateFormatException(String) - Constructor for exception eu.etaxonomy.cdm.remote.exception.CannotDisseminateFormatException
 
CAPEVERDEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
capitalDotWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capitalEpiWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capitalWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
carbonfive.spring.web.pathparameter - package carbonfive.spring.web.pathparameter
 
CardinalityPropertyFilter - Class in eu.etaxonomy.cdm.remote.json.util
 
CardinalityPropertyFilter() - Constructor for class eu.etaxonomy.cdm.remote.json.util.CardinalityPropertyFilter
 
caseInsensitive - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
CASPIANSEA() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
castReferenceToArticle() - Method in class eu.etaxonomy.cdm.model.reference.Reference
Generates, according to the cache strategy assigned to this reference, a string that identifies this reference and returns it.
castReferenceToBook() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToBookSection() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToCdDvd() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToDatabase() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToGeneric() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToInProceedings() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToJournal() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToMap() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPatent() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPersonalCommunication() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPrintSeries() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToProceedings() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToReport() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToThesis() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToWebPage() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
CATALAN_VALENCIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
catalogNumber - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CategoricalData - Class in eu.etaxonomy.cdm.model.description
This class represents information pieces expressed in categorical type of data (in opposition to quantitative data on one side and to literal data on the other side).
CategoricalData() - Constructor for class eu.etaxonomy.cdm.model.description.CategoricalData
Class constructor: creates a new empty categorical data instance.
CategoricalData(List<State>, Feature) - Constructor for class eu.etaxonomy.cdm.model.description.CategoricalData
Class constructor: creates a new empty categorical data instance.
CAUCASIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CAYMANISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CdDvdDefaultCacheStrategy<T extends Reference> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
CDM_BEAN_DEFINITION_FILE - Static variable in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
CDM_NAMESPACE - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CDM_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
CDM_SCHEMA_FILES - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CDM_UUID_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
CdmAccessor<BeanT,ValueT> - Class in eu.etaxonomy.cdm.jaxb
 
CdmAccessor(Accessor<BeanT, ValueT>) - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessor
 
CdmAccessorFactoryImpl - Class in eu.etaxonomy.cdm.jaxb
 
CdmAccessorFactoryImpl() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
CdmAccessorFactoryImpl(AccessorFactory) - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
CdmAntPathMatcher - Class in eu.etaxonomy.cdm.remote.controller.util
 
CdmAntPathMatcher() - Constructor for class eu.etaxonomy.cdm.remote.controller.util.CdmAntPathMatcher
 
cdmApp - Variable in class eu.etaxonomy.cdm.io.common.CdmDefaultIOBase
 
cdmApp - Variable in class eu.etaxonomy.cdm.io.common.IoConfiguratorBase
 
CdmApplicationAwareDefaultExport<T extends IExportConfigurator> - Class in eu.etaxonomy.cdm.io.common
This class is an default exporter class that is a spring bean and therefore it knows all other IO classes that are beans
CdmApplicationAwareDefaultExport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
 
CdmApplicationAwareDefaultImport<T extends IImportConfigurator> - Class in eu.etaxonomy.cdm.io.common
 
CdmApplicationAwareDefaultImport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
CdmApplicationController - Class in eu.etaxonomy.cdm.api.application
 
CdmApplicationController(Resource, ICdmDataSource, DbSchemaValidation, boolean, IProgressMonitor, List<ApplicationListener>) - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationController
Constructor, opens an spring 2.5 ApplicationContext by using the according data source
CdmApplicationDefaultConfiguration - Class in eu.etaxonomy.cdm.api.application
 
CdmApplicationDefaultConfiguration() - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration
Constructor
CdmApplicationUtils - Class in eu.etaxonomy.cdm.api.application
 
CdmApplicationUtils() - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationUtils
 
CdmAttributeMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
 
CdmAttributeMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmAttributeMapperBase
 
CdmAuthority - Class in eu.etaxonomy.cdm.persistence.hibernate.permission
A CdmAuthority consists basically of two parts which are separated by a dot character '.'.
CdmAuthority(CdmBase, EnumSet<CRUD>, UUID) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(CdmBase, String, EnumSet<CRUD>, UUID) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(CdmPermissionClass, String, EnumSet<CRUD>, UUID) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmBase - Class in eu.etaxonomy.cdm.model.common
The base class for all CDM domain classes implementing UUIDs and bean property change event firing.
CdmBase() - Constructor for class eu.etaxonomy.cdm.model.common.CdmBase
Class constructor assigning a unique UUID and creation date.
CdmBaseType - Enum in eu.etaxonomy.cdm.model
Enumeration of all abstract CDM base types.
CdmBeanProcessingRegistry - Class in eu.etaxonomy.cdm.remote.json.processor
Deprecated. class is not beeing used but kept as reference
CdmBeanProcessingRegistry() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.CdmBeanProcessingRegistry
Deprecated.  
CdmBooleanMapper - Class in eu.etaxonomy.cdm.io.berlinModel
 
CdmBooleanMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.CdmBooleanMapper
 
CdmDataChangeEvent - Class in eu.etaxonomy.cdm.persistence.hibernate
The CrudEvent unifies all CRUD events into one interface.
CdmDataChangeEvent.EventType - Enum in eu.etaxonomy.cdm.persistence.hibernate
The event types currently implemented
CdmDataChangeMap - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmDataChangeMap() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
CdmDataSource - Class in eu.etaxonomy.cdm.database
 
CdmDataSource(DatabaseTypeEnum, String, String, int, String, String, String, H2Mode, NomenclaturalCode) - Constructor for class eu.etaxonomy.cdm.database.CdmDataSource
 
CdmDbExportMapping<STATE extends DbExportStateBase<CONFIG,TRANSFORM>,CONFIG extends DbExportConfiguratorBase<STATE,TRANSFORM>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
CdmDbExportMapping(String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.CdmDbExportMapping
 
CdmDefaultExport<T extends IExportConfigurator> - Class in eu.etaxonomy.cdm.io.common
This is an exporter that invokes the application aware defaultExport when invoked itself
CdmDefaultExport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultExport
 
CdmDefaultImport<T extends IImportConfigurator> - Class in eu.etaxonomy.cdm.io.common
 
CdmDefaultImport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultImport
 
CdmDefaultIOBase<T extends IIoConfigurator> - Class in eu.etaxonomy.cdm.io.common
This is an exporter that invokes the application aware defaultExport when invoked itself
CdmDefaultIOBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultIOBase
 
CdmDeleteListener - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmDeleteListener() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmDeleteListener
 
CdmDocumentBuilder - Class in eu.etaxonomy.cdm.io.jaxb
Initializes a JaxbContext with one class (eu.etaxonomy.cdm.model.DataSet).
CdmDocumentBuilder() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CdmDocumentBuilder(boolean, String) - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CdmEntityDaoBase<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
CdmEntityDaoBase(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
CdmExceptionResolver - Class in eu.etaxonomy.cdm.remote.exception
 
CdmExceptionResolver() - Constructor for class eu.etaxonomy.cdm.remote.exception.CdmExceptionResolver
 
CdmExportBase<CONFIG extends IExportConfigurator<STATE,TRANSFORM>,STATE extends ExportStateBase,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common
 
CdmExportBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmExportBase
 
CdmFetch - Class in eu.etaxonomy.cdm.persistence.fetch
 
CdmGenericDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
CdmGenericDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl
 
CdmHibernateInterceptor - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmHibernateInterceptor() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmHibernateInterceptor
 
CdmIDResolver - Class in eu.etaxonomy.cdm.io.jaxb
 
CdmIDResolver() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmIDResolver
 
CdmImportBase<CONFIG extends IImportConfigurator,STATE extends ImportStateBase> - Class in eu.etaxonomy.cdm.io.common
 
CdmImportBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmImportBase
 
CdmImportBase.TermMatchMode - Enum in eu.etaxonomy.cdm.io.common
 
CdmIoApplicationController - Class in eu.etaxonomy.cdm.io.api.application
 
CdmIoApplicationController(Resource, ICdmDataSource, DbSchemaValidation, boolean, IProgressMonitor) - Constructor for class eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController
Constructor.
CdmIoBase<STATE extends IoStateBase> - Class in eu.etaxonomy.cdm.io.common
 
CdmIoBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmIoBase
 
CdmIoMapping - Class in eu.etaxonomy.cdm.io.common.mapping
 
CdmIoMapping() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmIoMapping
 
CdmListenerDuplicationStrategy - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmListenerDuplicationStrategy() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerDuplicationStrategy
 
CdmListenerIntegrator - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmListenerIntegrator() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerIntegrator
 
CdmMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
The most general mapper class for all cdm mappers.
CdmMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmMapperBase
 
CdmMarshallerListener - Class in eu.etaxonomy.cdm.io.jaxb
 
CdmMarshallerListener() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmMarshallerListener
 
CdmMassIndexer - Class in eu.etaxonomy.cdm.api.service.search
 
CdmMassIndexer() - Constructor for class eu.etaxonomy.cdm.api.service.search.CdmMassIndexer
 
CdmMetaData - Class in eu.etaxonomy.cdm.model.common
 
CdmMetaData() - Constructor for class eu.etaxonomy.cdm.model.common.CdmMetaData
Simple constructor to be used by Spring
CdmMetaData(CdmMetaData.MetaDataPropertyName, String) - Constructor for class eu.etaxonomy.cdm.model.common.CdmMetaData
 
CdmMetaData.MetaDataPropertyName - Enum in eu.etaxonomy.cdm.model.common
 
CdmMetaData.VersionComparator - Class in eu.etaxonomy.cdm.model.common
 
CdmMetaData.VersionComparator(Integer, IProgressMonitor) - Constructor for class eu.etaxonomy.cdm.model.common.CdmMetaData.VersionComparator
 
CdmNamespacePrefixMapper - Class in eu.etaxonomy.cdm.jaxb
 
CdmNamespacePrefixMapper() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
CdmObjectNonExisting - Exception in eu.etaxonomy.cdm.remote.service
Exception for cases when a CDM object identified by its UUID is not existing or the UUID is malformed and not even a valid UUID
CdmObjectNonExisting(String) - Constructor for exception eu.etaxonomy.cdm.remote.service.CdmObjectNonExisting
 
CdmObjectNonExisting(String, Class) - Constructor for exception eu.etaxonomy.cdm.remote.service.CdmObjectNonExisting
 
CdmOneToManyMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeMapperBase> - Class in eu.etaxonomy.cdm.io.berlinModel
 
CdmOneToManyMapper(Class<ONE>, Class<MANY>, String, SINGLE_MAPPER[]) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.CdmOneToManyMapper
 
CdmOneToManyXmlMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeXmlMapperBase> - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmOneToManyXmlMapper(Class<ONE>, Class<MANY>, String, SINGLE_MAPPER[]) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmOneToManyXmlMapper
 
CdmPermissionClass - Enum in eu.etaxonomy.cdm.persistence.hibernate.permission
 
CdmPermissionEvaluator - Class in eu.etaxonomy.cdm.persistence.hibernate.permission
 
CdmPermissionVoter - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
The CdmPermissionVoter provides access control votes for CdmBase objects.
CdmPermissionVoter() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.CdmPermissionVoter
 
CdmPermissionVoter.ValidationResult - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
Holds various flags with validation results.
CdmPermissionVoter.ValidationResult() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.CdmPermissionVoter.ValidationResult
 
CdmPersistentDataSource - Class in eu.etaxonomy.cdm.database
class to access an CdmDataSource
CdmPersistentDataSource.DbProperties - Enum in eu.etaxonomy.cdm.database
 
CdmPostDataChangeObservableListener - Class in eu.etaxonomy.cdm.persistence.hibernate
ICdmPostDataChangeObserver implementors may register for this listener and their update() will be called after any CRUD (Create, Retrieve, Update, Delete).
CdmPostDataChangeObservableListener() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmPostDataChangeObservableListener
 
CdmProxyBeanProcessorMatcher - Class in eu.etaxonomy.cdm.remote.json.processor.matcher
can handle HibernateProxys
CdmProxyBeanProcessorMatcher() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.matcher.CdmProxyBeanProcessorMatcher
 
CdmResourceResolver - Class in eu.etaxonomy.cdm.io.jaxb
Copied from CATE (@author ben.clark).
CdmResourceResolver() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmResourceResolver
 
CdmSchemaGenerator - Class in eu.etaxonomy.cdm.io.jaxb
This class is responsible for generating a set of XML schemas for the CDM.
CdmSchemaGenerator() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmSchemaGenerator
 
CdmSecurityHibernateInterceptor - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmSecurityHibernateInterceptor() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmSecurityHibernateInterceptor
 
CdmSingleAttributeMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
 
CdmSingleAttributeMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase
 
CdmSingleAttributeMapperBase(String, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase
 
CdmSingleAttributeXmlMapperBase - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmSingleAttributeXmlMapperBase(String, Namespace, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmSingleAttributeXmlMapperBase
 
CdmSingleAttributeXmlMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmSingleAttributeXmlMapperBase
Uses the Namespace of the parent Element
CdmStringMapper - Class in eu.etaxonomy.cdm.io.berlinModel
 
CdmStringMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.CdmStringMapper
 
CdmTcsXmlImport - Class in eu.etaxonomy.cdm.io.tcsxml.in
This class was created just as a test class to implement the according integration test.
CdmTcsXmlImport() - Constructor for class eu.etaxonomy.cdm.io.tcsxml.in.CdmTcsXmlImport
 
CdmTextElementMapper - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmTextElementMapper(String, Namespace, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmTextElementMapper
 
CdmTextElementMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmTextElementMapper
 
CdmTypePropertyEditor - Class in eu.etaxonomy.cdm.remote.editor
 
CdmTypePropertyEditor() - Constructor for class eu.etaxonomy.cdm.remote.editor.CdmTypePropertyEditor
 
CdmUnclearMapper - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmUnclearMapper(String, Namespace) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmUnclearMapper
 
CdmUnclearMapper(String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmUnclearMapper
 
CdmUpdater - Class in eu.etaxonomy.cdm.database.update
 
CdmUpdater() - Constructor for class eu.etaxonomy.cdm.database.update.CdmUpdater
 
CdmUriMapper - Class in eu.etaxonomy.cdm.io.berlinModel
 
CdmUriMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.berlinModel.CdmUriMapper
 
CdmUtils - Class in eu.etaxonomy.cdm.common
 
CdmUtils() - Constructor for class eu.etaxonomy.cdm.common.CdmUtils
 
CEBUANO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CELTIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRAL_AMERICAN_INDIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRAL_KHMER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRALAFRICANREPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CGLibEnhancedBeanProcessorMatcher - Class in eu.etaxonomy.cdm.remote.json.processor.matcher
 
CGLibEnhancedBeanProcessorMatcher() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.matcher.CGLibEnhancedBeanProcessorMatcher
 
CHADREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CHAGATAI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHAMICS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHAMORRO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
changeDataSource(ICdmDataSource) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation, boolean) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation, boolean, List<ApplicationListener>) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeHomotypicalGroupOfSynonym(Synonym, HomotypicalGroup, Taxon, boolean, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Changes the homotypic group of a synonym into the new homotypic group.
changeHomotypicalGroupOfSynonym(Synonym, HomotypicalGroup, Taxon, boolean, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changePassword(String, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
changePasswordForUser(String, String) - Method in interface eu.etaxonomy.cdm.api.service.IUserService
 
changePasswordForUser(String, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
changeSynonymToAcceptedTaxon(Synonym, Taxon, boolean, boolean, Reference, String) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Changes a synonym into an accepted taxon and removes the synonym relationship to the given accepted taxon.
changeSynonymToAcceptedTaxon(Synonym, Taxon, boolean, boolean, Reference, String) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeSynonymToRelatedTaxon(Synonym, Taxon, TaxonRelationshipType, Reference, String) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
TODO still needed and correct? Change a synonym into a related concept
changeSynonymToRelatedTaxon(Synonym, Taxon, TaxonRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
characters(char[], int, int) - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
CHECHEN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
check(STATE) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
check(STATE) - Method in interface eu.etaxonomy.cdm.io.common.ICdmIO
 
checkAdditionalContents(Element, CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[]) - Method in class eu.etaxonomy.cdm.io.reference.endnote.in.EndNoteImportBase
 
checkAdditionalContents(Element, IXmlMapper[], CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[]) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportBase
 
checkAdditionalContents(Element, CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[]) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportBase
 
checkAndRemoveAttributeValue(Map<String, Attribute>, String, String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Checks if the given attribute exists and has the given value.
checkColumnExists(String, String) - Method in class eu.etaxonomy.cdm.io.common.Source
Checks if an attribute exists in the database schema.
checkDbColumnExists() - Method in class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
checkIgnoreMapper(IDbImportMapper, ResultSet) - Method in interface eu.etaxonomy.cdm.io.common.mapping.ICheckIgnoreMapper
 
checkMandatoryElement(boolean, StartElement, String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Fires an mandatory element is missing event if exists is false.
checkMandatoryText(String, XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Checks if a mandatory text is not empty or null.
checkNoAttributes(Map<String, Attribute>, XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes.
checkNoAttributes(XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes.
checkNoAttributes(XMLEvent, int, String...) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes except those mentioned in "exceptions".
checkNotInPriorView(String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
checkObligatoryAttributes(BerlinModelImportConfigurator, BerlinModelReferenceImport) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelReferenceImportValidator
 
checkRefDetailUnimplementedAttributes(BerlinModelImportConfigurator) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelReferenceImportValidator
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.common.DbExportBase
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.common.DbImportBase
 
checkSqlServerColumnExists() - Method in class eu.etaxonomy.cdm.io.common.mapping.out.DbSingleAttributeExportMapperBase
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.tcsxml.out.TcsXmlExportBase
 
CHEROKEE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHEYENNE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHIBCHA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHICHEWA_CHEWA_NYANJA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
childCount() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Returns the number of children nodes of this feature node.
children - Variable in class eu.etaxonomy.cdm.common.TreeNode
 
ChildTaxaMustBeLowerRankThanParent - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustBeLowerRankThanParentValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustBeLowerRankThanParentValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustBeLowerRankThanParentValidator
 
ChildTaxaMustDeriveNameFromParent - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustDeriveNameFromParentValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustDeriveNameFromParentValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustDeriveNameFromParentValidator
 
ChildTaxaMustNotSkipRanks - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustNotSkipRanksValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustNotSkipRanksValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustNotSkipRanksValidator
 
CHILEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CHINAPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CHINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHINOOK_JARGON() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHIPEWYAN_DENE_SULINE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHOCTAW() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHRISTMASISLAND() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CHROMOSOME_NUMBER() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "chromosome number" feature.
CHURCH_SLAVIC_OLD_SLAVONIC_ETC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHUUKESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHUVASH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CITATION - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
CITATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "citation" feature.
CLASS - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
CLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
ClassAdapter - Class in eu.etaxonomy.cdm.jaxb
 
ClassAdapter() - Constructor for class eu.etaxonomy.cdm.jaxb.ClassAdapter
 
CLASSICAL_NEWARI_OLD_NEWARI_CLASSICAL_NEPAL_BHASA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CLASSICAL_SYRIAC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Classification - Class in eu.etaxonomy.cdm.model.taxon
 
Classification(String, Reference, Language) - Constructor for class eu.etaxonomy.cdm.model.taxon.Classification
 
Classification() - Constructor for class eu.etaxonomy.cdm.model.taxon.Classification
 
CLASSIFICATION_ALL - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Classifcation 'all' key
CLASSIFICATION_DEFAULT - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Classifcation 'default' key
ClassificationController - Class in eu.etaxonomy.cdm.remote.controller
 
ClassificationController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationController
 
ClassificationDaoHibernateImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.taxon
 
ClassificationDaoHibernateImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.ClassificationDaoHibernateImpl
 
ClassificationListController - Class in eu.etaxonomy.cdm.remote.controller
 
ClassificationListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationListController
 
ClassificationPortalController - Class in eu.etaxonomy.cdm.remote.controller
The ClassificationController class is a Spring MVC Controller.
ClassificationPortalController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationPortalController
 
ClassificationPortalListController - Class in eu.etaxonomy.cdm.remote.controller
The ClassificationController class is a Spring MVC Controller.
ClassificationPortalListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationPortalListController
 
classifications - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
ClassificationServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
ClassificationServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.ClassificationServiceImpl
 
ClassJSONValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
 
ClassJSONValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.ClassJSONValueProcessor
 
classMappers - Static variable in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
classString - Variable in class eu.etaxonomy.cdm.database.types.Db2DatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.MySQLDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.OdbcDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.OracleDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.PostgreSQLDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.SqlServer2005DatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.SybaseDatabaseType
 
clazz - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
clear() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
 
clear() - Method in interface eu.etaxonomy.cdm.api.service.IService
 
clear() - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
 
clear() - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
 
clear() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
clear() - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
clearContext() - Static method in class eu.etaxonomy.cdm.model.view.context.AuditEventContextHolder
 
clearContext() - Method in interface eu.etaxonomy.cdm.model.view.context.AuditEventContextHolderStrategy
Clears the context by setting the AuditEventContext in the current thread to null
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.GlobalAuditEventContextHolderStrategy
 
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.InheritableThreadLocalAuditEventContextHolderStrategy
 
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.ThreadLocalAuditEventContextHolderStrategy
 
clearContextKey() - Static method in class eu.etaxonomy.cdm.database.NamedContextHolder
 
clearExistingRecordIds() - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
clearWarnings() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
clone() - Method in class eu.etaxonomy.cdm.model.agent.Address
Clones this Address.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Clones this Contact.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Clones this Institution.
clone() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Clones this InstitutionalMembership.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Person
Clones this Person.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Team
Clones this Team.
clone() - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
clone(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Annotation
Clones this annotation and sets the clone's annotated object to 'annotatedObject'
clone(CdmBase) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Credit
 
clone() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
Clones this DefinedTermBase.
clone(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.model.common.DescriptionElementSource
Clones this original source and sets the clones sourced object to 'sourceObj'
clone() - Method in class eu.etaxonomy.cdm.model.common.DescriptionElementSource
 
clone() - Method in class eu.etaxonomy.cdm.model.common.EventBase
Clones this event base.
clone() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
clone(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.Extension
Clones this extension and sets the clone's extended object to 'extendedObject'
clone() - Method in class eu.etaxonomy.cdm.model.common.GrantedAuthorityImpl
Clones this Granted Authority.
clone() - Method in class eu.etaxonomy.cdm.model.common.Group
Clones this Group.
clone() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
clone(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableSource
Clones this original source and sets the clones sourced object to 'sourceObj'
clone() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableSource
 
clone() - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
clone() - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Marker
 
clone(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Marker
Clones this marker and sets the clones marked object to 'markedObject'
clone() - Method in class eu.etaxonomy.cdm.model.common.MultilanguageText
Clones this multi-language text.
clone() - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
Clones this OrderedTermBase.
clone() - Method in class eu.etaxonomy.cdm.model.common.OriginalSourceBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
Clones this relationship.
clone() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Representation
Clones this Representation.
clone() - Method in class eu.etaxonomy.cdm.model.common.TermBase
Clones this TermBase.
clone() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
Clones this TermVocabulary.
clone() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
clone() - Method in class eu.etaxonomy.cdm.model.common.User
Clones this User.
clone() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Clones this versionable entity.
clone() - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Clones this categorical data.
clone() - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
Clones this common name.
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Clones this descriptioin.
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Clones the description element.
clone(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Clones the description element.
The new element is added to the description.
clone() - Method in class eu.etaxonomy.cdm.model.description.Distribution
Clones this distribution.
clone() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Clones this FeatureNode.
clone() - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
Clones this FeatureTree.
clone() - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Clones this individuals association.
clone() - Method in class eu.etaxonomy.cdm.model.description.KeyStatement
Clones this KeyStatement.
clone() - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Clones this MediaKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Clones this MultiAccessKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Clones this PolytomousKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Clones this PolytomousKeyNode.
clone() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
Clones this quantitative data.
clone() - Method in class eu.etaxonomy.cdm.model.description.SpecimenDescription
Clones this specimen description.
clone() - Method in class eu.etaxonomy.cdm.model.description.StateData
Clones this state data.
clone() - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Clones this statistical measurement value.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Clones this taxon description.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
Clones this taxon interaction.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonNameDescription
Clones this taxon name description.
clone() - Method in class eu.etaxonomy.cdm.model.description.TextData
Clones this text data.
clone() - Method in class eu.etaxonomy.cdm.model.description.WorkingSet
Clones this WorkingSet.
clone() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
Clones this NamedArea.
clone() - Method in class eu.etaxonomy.cdm.model.location.Point
Clones this point.
clone() - Method in class eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.media.Media
 
clone() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
clone() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
clone() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
clone() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
Clones this dna sample.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
Clones this phylogenetic tree.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
Clones this sequence.
clone() - Method in class eu.etaxonomy.cdm.model.name.BacterialName
Clones this bacterial name.
clone() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Clones this botanical name.
clone() - Method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
Clones this cultivar plant name.
clone() - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
Clones this hybrid relationship.
clone() - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
Clones this name relationship.
clone() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Clones this name type.
clone() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Clones this nomenclatural status.
clone() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Clones this non-viral name.
clone() - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Clones this type specimen.
clone() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Clones this taxon name.
clone() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Clones this type designation.
clone() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Clones this viral name.
clone() - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Clones this zoological name.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
Clones this collection.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Clones this derivation event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnit
Clones this observation.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
Clones this derivedUnitBase.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
Clones this determination event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
Clones this field observation.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.Fossil
Clones this fossil.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Clones this gathering event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.LivingBeing
Clones this living beeing.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.Observation
Clones this observation.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.Specimen
Clones this specimen.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
clone() - Method in class eu.etaxonomy.cdm.model.reference.Reference
Clones this reference.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Classification
Clones this classification.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
 
clone() - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Clones this SynonymRelationship.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Clones this taxon.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Clones this taxon.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Clones this taxon node.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Clones this TaxonRelationship.
cloneDescendants() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
cloneDescendants() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Returns a set containing a clone of this node and of all nodes that are descendants of this node
close() - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
closes the application
close() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Free resources bound to this conversationHolder
close() - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Closes this facade.
close() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
close() - Method in class eu.etaxonomy.cdm.io.markup.LookAheadEventReader
 
close() - Method in class eu.etaxonomy.cdm.model.common.LSIDWSDLLocator
 
closeApplicationContext() - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
closes the application context
closeOpenConnections() - Method in interface eu.etaxonomy.cdm.database.ICdmDataSource
 
closeWriter(PrintWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
Closes the writer
closeWriter(XMLStreamWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
Closes the writer.
closeWriter(PrintWriter, DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
Closes the writer
closeWriter(XMLStreamWriter, DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
Closes the writer.
closeZip() - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportStateRedlist
 
closeZip() - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
COCOSISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
code - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Error
 
CODEN - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
collect(int) - Method in class org.apache.lucene.search.MultiCollector
 
Collection - Class in eu.etaxonomy.cdm.model.occurrence
 
Collection() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Collection
Constructor
COLLECTION_SEPARATOR - Static variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
COLLECTION_SEPARATOR - Static variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
collectionCode - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CollectionDaoHibernateImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence
 
CollectionDaoHibernateImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.CollectionDaoHibernateImpl
 
CollectionDefaultCacheStrategy - Class in eu.etaxonomy.cdm.strategy.cache.occurrence
A default cache strategy for collections.
CollectionDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.occurrence.CollectionDefaultCacheStrategy
 
CollectionExportMapping<STATE extends DbExportStateBase<CONFIG,TRANSFORM>,CONFIG extends DbExportConfiguratorBase<STATE,TRANSFORM>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
collectionID - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
collectionPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.SpecimenTypeParser
 
collections - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
CollectionServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
CollectionServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.CollectionServiceImpl
 
collectionString - Variable in class eu.etaxonomy.cdm.strategy.parser.SpecimenTypeParser.TypeInfo
 
COLOMBIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
ColumnAdder - Class in eu.etaxonomy.cdm.database.update
 
ColumnAdder(String, String, String, String, boolean, Object, boolean, String) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnAdder
 
columnAdders - Variable in class eu.etaxonomy.cdm.database.update.TableCreator
 
ColumnNameChanger - Class in eu.etaxonomy.cdm.database.update
 
ColumnNameChanger(String, String, String, String, boolean, Object, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnNameChanger
 
ColumnRemover - Class in eu.etaxonomy.cdm.database.update
 
ColumnRemover(String, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnRemover
 
COMBINATION_ILLEGITIMATE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "illegitimate combination".
COMBINATION_INVALID() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "invalid combination".
combine(String, String) - Method in class carbonfive.spring.web.pathparameter.ParameterizedPathMatcher
 
combine(String, String) - Method in class eu.etaxonomy.cdm.remote.controller.util.CdmAntPathMatcher
Changes the combination behavior of the overridden method AntPathMatcher.combine(String, String) only a little but quite useful bit:
commit() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Commit the running transaction.
commit(boolean) - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Commit the running transaction but optionally start a new one right away.
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration
 
commitTransaction(TransactionStatus) - Method in interface eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.service.description.TransmissionEngineDistribution
 
commitTransaction() - Method in interface eu.etaxonomy.cdm.database.ICdmDataSource
Commits the transaction for the given datasource.
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
commitTransaction(TransactionStatus) - Method in interface eu.etaxonomy.cdm.io.common.IPartitionedIO
 
COMMON_NAME() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "common_name" feature.
COMMON_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
COMMON_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.TDWGNamespacePrefixMapper
 
commonService - Variable in class eu.etaxonomy.cdm.api.service.IdentifiableServiceBase
 
CommonServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
CommonServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
CommonTaxonName - Class in eu.etaxonomy.cdm.model.description
This class represents common or vernacular names for taxa.
CommonTaxonName() - Constructor for class eu.etaxonomy.cdm.model.description.CommonTaxonName
Class constructor: creates a new empty common name instance.
COMOROSUNIONOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
compare(TreeNode<Distribution>, TreeNode<Distribution>) - Method in class eu.etaxonomy.cdm.api.service.DistributionNodeComparator
 
compare(TreeNode<NamedArea>, TreeNode<NamedArea>) - Method in class eu.etaxonomy.cdm.api.service.NamedAreaNodeComparator
 
compare(String, String) - Method in class eu.etaxonomy.cdm.model.common.CdmMetaData.VersionComparator
 
compare(T, T) - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
compare(TaxonNameBase, TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameComparator
 
compare(TaxonBase, TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
Returns an integer generated by comparing fist the nomenclatural status and then the publication years of both taxon names used in the given taxa.
compare(TaxonBase, TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparatorSearch
 
compare(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator
 
compareSeverity(DeleteResult.DeleteStatus) - Method in enum eu.etaxonomy.cdm.api.service.DeleteResult.DeleteStatus
 
compareTo(GeoServiceArea.SubArea) - Method in class eu.etaxonomy.cdm.ext.geo.GeoServiceArea.SubArea
 
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.common.GrantedAuthorityImpl
 
compareTo(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
compareTo(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
Compares this OrderedTermBase with the specified OrderedTermBase for order.
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.media.Media
 
compareTo(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
 
compareTo(HybridRelationshipType) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
 
compareTo(Rank) - Method in class eu.etaxonomy.cdm.model.name.Rank
It is necessary to skip the vocabulary check, otherwise we would have problems in some CacheStrategies, due to uninitialized Vocabularies.
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
compareVersion(String, String, Integer, IProgressMonitor) - Static method in class eu.etaxonomy.cdm.model.common.CdmMetaData
Compares two version string.
COMPLETE() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
completeListSize - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.ResumptionToken
 
compression - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
computeBasionymAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Shortcut.
computeCombinationAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Shortcut.
COMPUTED() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
computeExBasionymAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Shortcut.
computeExCombinationAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Shortcut.
concat(CharSequence, String[]) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Concatenates an array of strings using the defined seperator.
Null values are interpreted as empty strings.
If all strings are null then null is returned.
concat(CharSequence, String, String) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Concatenates two strings, using the defined seperator.
Null values are interpreted as empty Strings.
If both strings are null then null is returned.
ConcatenatingReader<TYPE> - Class in eu.etaxonomy.cdm.io.dwca.in
 
ConcatenatingReader() - Constructor for class eu.etaxonomy.cdm.io.dwca.in.ConcatenatingReader
 
ConcatenatingReader(IReader<TYPE>) - Constructor for class eu.etaxonomy.cdm.io.dwca.in.ConcatenatingReader
 
Concept - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
Concept() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.Concept
 
CONFER() - Static method in class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
 
config - Variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
config - Variable in class eu.etaxonomy.cdm.io.dwca.in.PartitionableConverterBase
 
config - Variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
Configuration - Class in eu.etaxonomy.cdm.config
 
Configuration() - Constructor for class eu.etaxonomy.cdm.config.Configuration
 
configure(Type, Properties, Dialect) - Method in class eu.etaxonomy.cdm.persistence.hibernate.TableGenerator
configureAuthorityServiceDef(String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidWsdlWrapperImpl
 
configureDataServiceDef(String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidWsdlWrapperImpl
 
configureLogFile() - Method in class eu.etaxonomy.cdm.remote.config.LoggingConfigurer
 
CONFUSUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "confusum".
CONGODEMOCRATICREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CONGOPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CONGRUENT_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDED_OR_INCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES_OR_OVERLAPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_OVERLAPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_OVERLAPS_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_TO() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is congruent to".
connectToDatabase(DatabaseTypeEnum, String, String, String, String, int, String, H2Mode, NomenclaturalCode) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatabase(DatabaseTypeEnum, String, String, String, String) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatabase(DatabaseTypeEnum, String, String, String, String, int, String, H2Mode, NomenclaturalCode) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters
connectToDatabase(DatabaseTypeEnum, String, String, String, String) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters.
connectToDatasource(CdmPersistentDataSource) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatasource(CdmPersistentDataSource) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters.
CONSERVATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "conservation" feature.
CONSERVED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "conserved".
CONSERVED_AGAINST() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "conserved against" name relationship type.
CONSERVED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be conserved".
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dc.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dc.ListRecordsView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dwc.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListRecordsView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.rdf.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.rdf.ListRecordsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ExceptionView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.GetRecordView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.IdentifyView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListIdentifiersView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListMetadataFormatsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListRecordsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListSetsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.OaiPmhResponseView
 
Contact - Class in eu.etaxonomy.cdm.model.agent
The class for information on how to approach a person or an institution.
Contact() - Constructor for class eu.etaxonomy.cdm.model.agent.Contact
Class constructor.
contains(Object, Object) - Method in class eu.etaxonomy.cdm.model.common.PersistentMultiLanguageTextType
 
contains(NamedAreaLevel) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.NamedAreaNode
 
containsChild(TreeNode<Distribution>, TreeNode<Distribution>) - Method in class eu.etaxonomy.cdm.api.service.DistributionTree
 
containsChild(TreeNode<T>) - Method in class eu.etaxonomy.cdm.common.TreeNode
 
containsId(Object) - Method in class eu.etaxonomy.cdm.io.common.MapWrapper
 
containsKey(Language) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
containsKey(Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
containsValue(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
containsValue(Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
content - Variable in class eu.etaxonomy.cdm.jaxb.FormattedText
 
CONTEXT_CLASSES - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
Continent - Class in eu.etaxonomy.cdm.model.location
 
Continent() - Constructor for class eu.etaxonomy.cdm.model.location.Continent
Constructor
continent - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CONTRADICTION() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is impossible" (contradiction).
ControllerUtils - Class in eu.etaxonomy.cdm.remote.controller.util
 
ControllerUtils() - Constructor for class eu.etaxonomy.cdm.remote.controller.util.ControllerUtils
 
CONVAR() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
ConversationHolder - Class in eu.etaxonomy.cdm.api.conversation
This is an implementation of the session-per-conversation pattern for usage in a Spring context.
ConversationHolder(DataSource, SessionFactory, PlatformTransactionManager) - Constructor for class eu.etaxonomy.cdm.api.conversation.ConversationHolder
 
conversionComments - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
conversionSuccessful - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.DateTimeConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.DefaultRelatedPageConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.HibernateProxyNullSafeDeepConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.IdentifierConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.LsidConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.LsidProxyConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.PreferLsidToUriConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.StripTagsConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.TimePeriodConverter
 
convertAptToHtml(File) - Static method in class eu.etaxonomy.cdm.common.DocUtils
Converts an apt file into html.
convertAptToHtml(InputStream) - Static method in class eu.etaxonomy.cdm.common.DocUtils
Converts an apt input stream into html.
convertedCoord - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
COOKISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CoordinateConverter - Class in eu.etaxonomy.cdm.strategy.parser.location
 
CoordinateConverter() - Constructor for class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter
 
CoordinateConverter.ConversionResults - Class in eu.etaxonomy.cdm.strategy.parser.location
 
CoordinateConverter.ConversionResults() - Constructor for class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
CoordinateConverter.CustomPatternIn - Class in eu.etaxonomy.cdm.strategy.parser.location
 
CoordinateConverter.CustomPatternIn() - Constructor for class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
coordinatePrecision - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
COORDINATES - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
coordinateUncertaintyInMeters - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
COPTIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
copy(File, File, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
Copies a File to another directory
copy(InputStream, File, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(InputStream, OutputStream) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(String, String, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(String, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
COPYRIGHT() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
 
core - Variable in class eu.etaxonomy.cdm.io.dwca.jaxb.Archive
 
Core - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Core() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Core
 
Coreid - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Coreid() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Coreid
 
coreid - Variable in class eu.etaxonomy.cdm.io.dwca.jaxb.Extension
 
CORNISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CorrectEpithetsForRank - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
CorrectEpithetsForRankValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
CorrectEpithetsForRankValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.CorrectEpithetsForRankValidator
 
CORSICAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
COSTARICAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
COTEDIVOIREIVORYCOASTREPUBLICOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
count(Person, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.AnnotationService
 
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.AnnotationService
 
count(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
count(Person, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IAnnotationService
return a count of the number of annotations made by this person, optionally filtered by the status of those annotations
count(User, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IAnnotationService
return a count of the number of annotations created by this user, optionally filtered by the status of those annotations
count(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in interface eu.etaxonomy.cdm.api.service.IDescriptionService
Count the descriptions of type , filtered using the following parameters
count(User, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IMarkerService
 
count(Class<? extends T>) - Method in interface eu.etaxonomy.cdm.api.service.IService
Returns a count of all entities of type optionally restricted to objects belonging to a class that that extends
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.MarkerServiceImpl
 
count - Variable in class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
 
count(Class<? extends T>) - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
 
count - Variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
count - Variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
count(Person, MarkerType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotationDao
Returns a count of Annotations, optionally filtered by commentator and status
count(User, MarkerType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotationDao
Returns a count of Annotations, optionally filtered by creator and status
count() - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
 
count(Class<? extends T>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
Returns the number of objects of type - which must extend T
count(T, Set<String>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
Method that counts the number of objects matching the example provided.
count(NamedAreaLevel, NamedAreaType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
Returns a count of NamedArea instances (optionally filtered by type or level)
count(MarkerType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IMarkerDao
Returns a count of markers which have the same type
count(Class<? extends T>, String) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ISearchableDao
Returns a count of T instances where entities match a given queryString (as interpreted by the Lucene QueryParser)
count() - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IIdentificationKeyDao
Returns the number of objects of type IIdentificationKey
count(Person, MarkerType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotationDaoImpl
 
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotationDaoImpl
 
count() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
count(Class<? extends T>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
count(T, Set<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
count(NamedAreaLevel, NamedAreaType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
count(Class<? extends T>, String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
count(MarkerType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.MarkerDaoImpl
 
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.MarkerDaoImpl
 
count() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
count(Class<? extends T>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
count(T, Set<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
count(Class<? extends DescriptionElementBase>, String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionElementDaoImpl
 
count(String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionElementDaoImpl
 
count() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.IdentificationKeyDaoImpl
 
count(Class<? extends SpecimenOrObservationBase>, TaxonBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.OccurrenceDaoHibernateImpl
 
count() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.view.AuditEventDao
 
count(Class<? extends SpecimenOrObservationBase>, TaxonBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.occurrence.IOccurrenceDao
Returns the number of occurences belonging to a certain subclass - which must extend SpecimenOrObservationBase
count() - Method in interface eu.etaxonomy.cdm.persistence.view.IAuditEventDao
Count the AuditEvents in this database
countAddresses(AgentBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.agent.IAgentDao
Return a count of addresses of a given agent
countAddresses(AgentBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.agent.AgentDaoImpl
 
countAllRelationships() - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
 
countAllRelationships() - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
countAllRelationships(Class<? extends RelationshipBase>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
TODO not yet in interface
countAllRelationships() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countAllRelationships(Class<? extends RelationshipBase>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countAllRelationships() - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countAnnotations(T, MarkerType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotatableDao
Returns a count of Annotations belonging to the supplied AnnotatableEntity
countAnnotations(T, MarkerType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl
 
countAuditEvents(T, AuditEventSort) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IVersionableDao
Returns a count of audit events which affected the state of an entity t.
countAuditEvents(Class<? extends T>, AuditEvent, AuditEvent, List<AuditCriterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IVersionableDao
Returns a count of the total number of audit events affecting objects of class T, optionally restricted to objects of class clazz, the AuditEvents from and to, inclusive, optionally filtered by other criteria
countAuditEvents(T, AuditEventSort) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
countAuditEvents(Class<? extends T>, AuditEvent, AuditEvent, List<AuditCriterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
countByName(String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IGroupDao
Return a count of groups matching the given query string in the name, optionally filtered by class, optionally with a particular MatchMode
countByName(String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.GroupDaoImpl
 
countByName(String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countByName(Class<? extends TaxonNameBase>, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countByName(String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
 
countByName(Class<? extends TaxonNameBase>, String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
 
countByParam(Class<? extends T>, String, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
countByParam(Class<? extends T>, String, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
countByReferenceTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao
Return a count of objects matching the given query string in the title, optionally filtered by class, optionally with a particular MatchMode
countByReferenceTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countByTaxonomicScope(TaxonBase, Class<T>) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IIdentificationKeyDao
Counts IdentificationKeys which cover the Taxon given as parameter
countByTaxonomicScope(TaxonBase, Class<T>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.IdentificationKeyDaoImpl
 
countByTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.api.service.IdentifiableServiceBase
 
countByTitle(IIdentifiableEntityServiceConfigurator<T>) - Method in class eu.etaxonomy.cdm.api.service.IdentifiableServiceBase
 
countByTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.api.service.IIdentifiableEntityService
Return an Integer of how many objects matching the given query string, optionally filtered by class, optionally with a particular MatchMode
countByTitle(IIdentifiableEntityServiceConfigurator<T>) - Method in interface eu.etaxonomy.cdm.api.service.IIdentifiableEntityService
Return an Integer of how many objects matching the given query string, optionally filtered by class, optionally with a particular MatchMode
countByTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao
Return a count of objects matching the given query string in the titleCache, optionally filtered by class, optionally with a particular MatchMode
countByTitle(String) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ITitledDao
 
countByTitle(String, CdmBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ITitledDao
 
countByTitle(String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ITitledDao
 
countByTitle(Class<? extends T>, String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countByTitle(String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countByTitle(String, CdmBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countByTitle(String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countByUsername(String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IUserDao
Return a count of users matching the given query string in the username, optionally filtered by class, optionally with a particular MatchMode
countByUsername(String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.UserDaoImpl
 
countDefinedTermByRepresentationAbbrev(String, Class<? extends DefinedTermBase>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
 
countDefinedTermByRepresentationAbbrev(String, Class<? extends DefinedTermBase>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countDefinedTermByRepresentationText(String, Class<? extends DefinedTermBase>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
 
countDefinedTermByRepresentationText(String, Class<? extends DefinedTermBase>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countDerivationEvents(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.OccurrenceDaoHibernateImpl
 
countDerivationEvents(SpecimenOrObservationBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.occurrence.IOccurrenceDao
Returns a count of derivation events that have involved creating new DerivedUnits from this occurence
countDescriptionByCommonName(String, MatchMode) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
 
countDescriptionByCommonName(String, MatchMode) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countDescriptionByDistribution(Set<NamedArea>, PresenceAbsenceTermBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Returns a count of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally filtered by a type of PresenceAbsenceTerm e.g.
countDescriptionByDistribution(Set<NamedArea>, PresenceAbsenceTermBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countDescriptionElements(DescriptionBase, Set<Feature>, Class<? extends DescriptionElementBase>) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Returns a count of description elements of type , belonging to a given description, optionally filtered by one or more features
countDescriptionElements(DescriptionBase, Set<Feature>, Class<? extends DescriptionElementBase>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countDescriptions(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Count the descriptions of type , filtered using the following parameters
countDescriptions(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countDeterminations(SpecimenOrObservationBase, TaxonBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.OccurrenceDaoHibernateImpl
 
countDeterminations(SpecimenOrObservationBase, TaxonBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.occurrence.IOccurrenceDao
Returns a count of determinations that have been made for a given occurence and for a given taxon concept
countGeneralizationOf(T) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
Return a count of terms which are specializations of a given definedTerm
countGeneralizationOf(T) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countGroups(DetachedCriteria, List<Grouping>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
countHybridNames(NonViralName, HybridRelationshipType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countHybridNames(NonViralName, HybridRelationshipType) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Return a count of hybrids related to this name, optionally filtered by hybrid relationship type
countIncludes(Set<T>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
Return a count of terms which are part of the terms supplied
countIncludes(Set<T>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countInstitutionalMemberships(Person) - Method in interface eu.etaxonomy.cdm.persistence.dao.agent.IAgentDao
Return a count of institutional memberships held by a person
countInstitutionalMemberships(Person) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.agent.AgentDaoImpl
 
countLanguages() - Method in class eu.etaxonomy.cdm.model.description.KeyStatement
Returns the number of languages in which the label of this key statement has been formulated.
countLanguages() - Method in class eu.etaxonomy.cdm.model.description.TextData
Returns the number of languages in which the content of this text data has been formulated.
countMarkers(Class<? extends T>, Boolean) - Method in class eu.etaxonomy.cdm.api.service.AnnotatableServiceBase
 
countMarkers(Class<? extends T>, Boolean) - Method in interface eu.etaxonomy.cdm.api.service.IAnnotatableService
returns a count of all markers belonging to that clazz, optionally filtered to include only technical or only non-technical markers.
countMarkers(T, Boolean) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotatableDao
Returns a count of Markers belonging to the supplied AnnotatableEntity
countMarkers(Class<? extends T>, Boolean) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotatableDao
returns a count of all markers belonging to that clazz, optionally filtered to include only technical or only non-technical markers.
countMarkers(T, Boolean) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl
 
countMarkers(Class<? extends T>, Boolean) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl
 
countMatchesByName(String, MatchMode, boolean) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countMatchesByName(String, MatchMode, boolean, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countMatchesByName(String, MatchMode, boolean) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countMatchesByName(String, MatchMode, boolean, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countMedia(DefinedTermBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
Returns a count of the Media that represent a given DefinedTermBase instance
countMedia(DescriptionElementBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionElementDao
Returns a count of Media that are associated with a given description element
countMedia(DefinedTermBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countMedia(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionElementDaoImpl
 
countMedia(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.OccurrenceDaoHibernateImpl
 
countMedia(SpecimenOrObservationBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.occurrence.IOccurrenceDao
Returns a count of Media that are associated with a given occurence
countMediaKeys(Set<Taxon>, Set<NamedArea>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.media.MediaDaoHibernateImpl
 
countMediaKeys(Set<Taxon>, Set<NamedArea>) - Method in interface eu.etaxonomy.cdm.persistence.dao.media.IMediaDao
Return a count of MediaKeys, optionally filtered by the parameters passed.
countMembers(Team) - Method in interface eu.etaxonomy.cdm.persistence.dao.agent.IAgentDao
Return a count of members of a given team
countMembers(Team) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.agent.AgentDaoImpl
 
countNameRelationships(TaxonNameBase, RelationshipBase.Direction, NameRelationshipType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countNameRelationships(TaxonNameBase, RelationshipBase.Direction, NameRelationshipType) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Return a count of names related to or from this name, optionally filtered by relationship type.
countNames(String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countNames(String, MatchMode, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countNames(String, String, String, String, Rank) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countNames(String, String, String, String, Rank) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Returns a count of TaxonNameBase instances that match the properties passed
countNames(String, MatchMode, List<Criterion>) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Returns a count of TaxonNameBase instances that match the properties passed
countNames(String) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Returns a count of TaxonNameBase instances which nameCache matches the String queryString
countObservers() - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
countObservers() - Method in interface eu.etaxonomy.cdm.io.common.IIoObservable
Returns the number of observers of this Observable object.
countObservers() - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
countObservers() - Method in class eu.etaxonomy.cdm.io.common.ObservableBase
 
countPartOf(Set<T>) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao
Return a count of distinct terms which include the terms supplied
countPartOf(Set<T>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
countRankSpecificRootNodes(Classification, Rank) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.ClassificationDaoHibernateImpl
 
countRankSpecificRootNodes(Classification, Rank) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.IClassificationDao
 
countRights(T) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao
Return a count of the rights for this identifiable entity
countRights(T) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countRights(Media) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.media.MediaDaoHibernateImpl
 
countRights(Media) - Method in interface eu.etaxonomy.cdm.persistence.dao.media.IMediaDao
Return a count of the rights for this media entity
country - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
country - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
COUNTRY() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
country - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
COUNTRY_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImporterBase
 
countryCode - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
countSources(T) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao
Return a count of the sources for this identifiable entity
countSources(T) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countSteps(ICdmDataSource, IProgressMonitor) - Method in interface eu.etaxonomy.cdm.database.update.IUpdater
Returns the number of steps to run to update the datasource to the schema this schema updater is updating to.
countSteps(ICdmDataSource, IProgressMonitor) - Method in class eu.etaxonomy.cdm.database.update.UpdaterBase
 
countSteps() - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
countSteps() - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
countSteps() - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
countSynonymRelationships(TaxonBase, SynonymRelationshipType, RelationshipBase.Direction) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countSynonymRelationships(TaxonBase, SynonymRelationshipType, RelationshipBase.Direction) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countSynonyms(Taxon, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countSynonyms(Synonym, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countSynonyms(Taxon, SynonymRelationshipType) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
Returns a count of the SynonymRelationships (of where relationship.type == type, if this arguement is supplied) where the supplied taxon is relatedTo.
countSynonyms(Synonym, SynonymRelationshipType) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
Returns a count of the SynonymRelationships (of where relationship.type == type, if this arguement is supplied) where the supplied synonym is relatedFrom.
countTasks() - Method in class eu.etaxonomy.cdm.api.application.MonitoredGenericApplicationContext
 
countTaxaByCommonName(String, Classification, MatchMode, Set<NamedArea>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countTaxaByCommonName(String, Classification, MatchMode, Set<NamedArea>) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countTaxaByName(boolean, boolean, boolean, String, Classification, MatchMode, Set<NamedArea>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countTaxaByName(Class<? extends TaxonBase>, String, String, String, String, Rank) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countTaxaByName(boolean, boolean, boolean, String, Classification, MatchMode, Set<NamedArea>) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
 
countTaxaByName(Class<? extends TaxonBase>, String, String, String, String, Rank) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
Returns a count of TaxonBase instances where the taxon.name properties match the parameters passed.
countTaxonDescriptionMedia(UUID, boolean, Set<MarkerType>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
countTaxonDescriptionMedia(UUID, boolean, Set<MarkerType>) - Method in interface eu.etaxonomy.cdm.api.service.IDescriptionService
Returns count for all Media attached to a taxon via TaxonDescription.elements.media.
countTaxonDescriptionMedia(UUID, Boolean, Set<MarkerType>) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Returns a count of Media instances, optionally filtered by parameters passed to this method Maybe in future a similar method is implemented in IMediaDao which allows more media sources to be included.
countTaxonDescriptionMedia(UUID, Boolean, Set<MarkerType>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countTaxonDescriptions(Taxon, Set<Scope>, Set<NamedArea>, Set<MarkerType>) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Returns a count of TaxonDescription instances, optionally filtered by parameters passed to this method
countTaxonDescriptions(Taxon, Set<Scope>, Set<NamedArea>, Set<MarkerType>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countTaxonNameDescriptions(TaxonNameBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.description.IDescriptionDao
Returns a count of TaxonNameDescription instances, optionally filtered by the name which they refer to
countTaxonNameDescriptions(TaxonNameBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
countTaxonRelationships(Taxon, TaxonRelationshipType, RelationshipBase.Direction) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
countTaxonRelationships(Taxon, TaxonRelationshipType, RelationshipBase.Direction) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
Returns a count of the TaxonRelationships (of where relationship.type == type, if this argument is supplied) where the supplied taxon either is relatedFrom or relatedTo depending on the direction parameter.
countTerms(TermVocabulary) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ITermVocabularyDao
Return a count of terms that belong to the termVocabulary supplied
countTerms(TermVocabulary) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.TermVocabularyDaoImpl
 
countTitleCache(Class<? extends T>, String, MatchMode) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao
Return a count of distinct titleCache Strings for a given IdentifiableEntity, optionally filtered by class, optionally with a particular MatchMode
countTitleCache(Class<? extends T>, String, MatchMode) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
countTrees() - Method in class eu.etaxonomy.cdm.io.common.ImportStateBase
 
countTreeUuids() - Method in class eu.etaxonomy.cdm.io.common.ImportStateBase
 
countTypeDesignations(TaxonNameBase, SpecimenTypeDesignationStatus) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
countTypeDesignations(TaxonNameBase, SpecimenTypeDesignationStatus) - Method in interface eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao
Return a count of types related to this name, optionally filtered by type designation status
county - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CREATE - Static variable in class eu.etaxonomy.cdm.io.common.CdmImportBase
 
CREATE - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
create(Document) - Method in class eu.etaxonomy.cdm.print.out.odf.DocumentCreator
 
createAboutType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of About
createAllInferredSynonyms(Taxon, Classification, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Creates all inferred synonyms for the taxon in the classification, but do not insert it to the database
createAllInferredSynonyms(Taxon, Classification, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
createArchive() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Archive
createAuthor(String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
createBean(String, RootBeanDefinition, Object[]) - Method in class eu.etaxonomy.cdm.api.application.MonitoredListableBeanFactory
 
createCore() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Core
createCoreid() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Coreid
createdAndNotesAttributes - Static variable in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
CreatedAndNotesMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
createDataHolderRow() - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
createDataHolderRow() - Method in class eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImport
 
createDataHolderRow() - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImport
 
createDataSource() - Method in class eu.etaxonomy.cdm.database.LocalH2
 
createDataSource() - Method in class eu.etaxonomy.cdm.database.NomenclaturalCodeAwareDataSource
 
createDefaultStyles() - Method in class eu.etaxonomy.cdm.print.out.odf.StylesFactory
 
createDefinedTerm(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
createDefinedTerm(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionTypeCreationMapper
 
createDefinedTerm(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportFeatureCreationMapper
 
createDescriptionType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Description
createDictionary(Class<T>, IProgressMonitor) - Method in class eu.etaxonomy.cdm.api.service.search.CdmMassIndexer
 
createDictionary(IProgressMonitor) - Method in class eu.etaxonomy.cdm.api.service.search.CdmMassIndexer
 
createDictionary(IProgressMonitor) - Method in interface eu.etaxonomy.cdm.api.service.search.ICdmMassIndexer
Create (spell-checking) dictionary listed in ICdmMassIndexer.dictionaryClasses().
createExtension() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Extension
createField() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Field
createFieldAccessor(Class, Field, boolean) - Method in class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
createFileOutputStream(CsvTaxExportConfiguratorRedlist, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
createFileOutputStream(DwcaTaxExportConfigurator, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
createFiles() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Files
createGetRecordType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of GetRecord
createGroup(String, List<GrantedAuthority>) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
createGroup(String, List<GrantedAuthority>) - Method in class eu.etaxonomy.cdm.api.service.UserService
Deprecated. 
createHeaderType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Header
createId() - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of Id
createIdentifyType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Identify
createImageElement(ImageFile) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
Deprecated. not used by EDITor anymore
createInferredSynonyms(Taxon, Classification, SynonymRelationshipType, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Creates the specified inferred synonyms for the taxon in the classification, but do not insert it to the database
createInferredSynonyms(Taxon, Classification, SynonymRelationshipType, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
createLabel(String, String) - Method in class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
 
createLabel(String, String) - Method in class eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl
 
createLabel(String, String) - Method in class eu.etaxonomy.cdm.api.service.pager.impl.StringLabelPagerImpl
 
createListIdentifiersType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of ListIdentifiers
createListMetadataFormatsType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of ListMetadataFormats
createListRecordsType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of ListRecords
createListSetsType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of ListSets
createLocation(String) - Method in class eu.etaxonomy.cdm.io.dwca.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createMetadataFormatType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of MetadataFormat
createMetadataType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Metadata
createNameByCode(MarkupImportState, Rank) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Creates a NonViralName object depending on the defined NomenclaturalCode and the given parameters.
createNewAuthentication(Authentication, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
createOAIPMH(OAIPMH) - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of JAXBElement<OAIPMHtype >}
createOAIPMHerrorType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Error
createOAIPMHtype() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of OAIPMHtype
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportCommonNameCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDistributionCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportImageCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportMarkerCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapper
 
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase
This method creates the object to be created.
createObject(ResultSet) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
createObject(ResultSet, STATE) - Method in interface eu.etaxonomy.cdm.io.common.mapping.IMappingImport
 
createOutput(String, String) - Method in class eu.etaxonomy.cdm.io.jaxb.CdmSchemaGenerator
Buffers one schema file per namespace.
createPkNode(Feature, KeyStatement) - Method in class eu.etaxonomy.cdm.io.sdd.ikeyplus.IkeyPlusImport
 
createPort(Binding, LSIDStandardPort) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidWsdlWrapperImpl
Create a port for the given binding, protocol, hostname, port and name.
createPort(Binding, LSIDStandardPort) - Method in interface eu.etaxonomy.cdm.api.service.lsid.LSIDWSDLWrapper
Create a port for the given binding, protocol, hostname, port and name.
createPrintWriter(String, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
createPrintWriter(String, DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
createPropertyAccessor(Class, Method, Method) - Method in class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
createRecordType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Record
createRequestType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Request
createResultSet(LuceneSearch.TopGroupsWithMaxScore, String[], ICdmEntityDao<T>, Map<CdmBaseType, String>, List<String>) - Method in interface eu.etaxonomy.cdm.api.service.search.ISearchResultBuilder
Creates a List of SearchResult entities from the supplied TopDocs.
createResultSet(TopDocs, String[], ICdmEntityDao<T>, Map<CdmBaseType, String>, List<String>) - Method in interface eu.etaxonomy.cdm.api.service.search.ISearchResultBuilder
Creates a List of SearchResult entities from the supplied TopDocs.
createResultSet(LuceneSearch.TopGroupsWithMaxScore, String[], ICdmEntityDao<T>, Map<CdmBaseType, String>, List<String>) - Method in class eu.etaxonomy.cdm.api.service.search.SearchResultBuilder
Creates a List of SearchResult entities from the supplied TopDocs.
createResultSet(TopDocs, String[], ICdmEntityDao<T>, Map<CdmBaseType, String>, List<String>) - Method in class eu.etaxonomy.cdm.api.service.search.SearchResultBuilder
Creates a List of SearchResult entities from the supplied TopDocs.
createResumptionTokenType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of ResumptionToken
createSchema() - Method in class eu.etaxonomy.cdm.io.jaxb.CdmSchemaGenerator
Not used Buffers one single generated schema.
createSetType() - Method in class eu.etaxonomy.cdm.remote.dto.oaipmh.ObjectFactory
Create an instance of Set
createString(List<TaggedText>) - Static method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Creates a string from tagged text by concatenating all tags.
createString(List<TaggedText>, HTMLTagRules) - Static method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
createTransientDefaultFeatureTree() - Method in class eu.etaxonomy.cdm.api.service.FeatureTreeServiceImpl
 
createTransientDefaultFeatureTree() - Method in interface eu.etaxonomy.cdm.api.service.IFeatureTreeService
 
createUri(URL, String, List<NameValuePair>, String) - Static method in class eu.etaxonomy.cdm.common.UriUtils
 
createUri(String, List<NameValuePair>) - Method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
createUser(UserDetails) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
createXmlStreamWriter(CsvTaxExportStateRedlist, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
createXmlStreamWriter(DwcaTaxExportState, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
 
createXsltSource(Map, String, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.view.WsdlView
 
credentialsNonExpired - Variable in class eu.etaxonomy.cdm.model.common.User
 
Credit - Class in eu.etaxonomy.cdm.model.common
 
Credit() - Constructor for class eu.etaxonomy.cdm.model.common.Credit
 
Credit(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Credit
 
CREE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CREEK() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CREOLES_PIDGINS_ENGLISH_BASED_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CREOLES_PIDGINS_FRENCH_BASED_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CREOLES_PIDGINS_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CREOLES_PIDGINS_PORTUGUESE_BASED_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CRIMEAN_TATAR_CRIMEAN_TURKISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CROATIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CRUD - Enum in eu.etaxonomy.cdm.persistence.hibernate.permission
 
CSV_LANGUAGE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CsvExportBaseRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvExportBaseRedlist() - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
CsvExportController - Class in eu.etaxonomy.cdm.remote.controller.csv
 
CsvExportController() - Constructor for class eu.etaxonomy.cdm.remote.controller.csv.CsvExportController
 
CsvId - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvId(CsvTaxExportConfiguratorRedlist) - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvId
 
CsvMetaDataRecordRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvMetaDataRecordRedlist(boolean, String, String) - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvMetaDataRecordRedlist
 
CsvMetaDataRecordRedlist.FieldEntry - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvMetaDataRecordRedlist.FieldEntry() - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvMetaDataRecordRedlist.FieldEntry
 
CsvRecordBaseRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvRecordBaseRedlist(CsvMetaDataRecordRedlist, CsvTaxExportConfiguratorRedlist) - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
CsvStream - Class in eu.etaxonomy.cdm.io.dwca.in
 
CsvStream(CSVReader, ArchiveEntryBase, int) - Constructor for class eu.etaxonomy.cdm.io.dwca.in.CsvStream
 
CsvStreamItem - Class in eu.etaxonomy.cdm.io.dwca.in
 
CsvStreamItem(TermUri, Map<String, String>, CsvStream, int) - Constructor for class eu.etaxonomy.cdm.io.dwca.in.CsvStreamItem
 
CsvTaxExportConfiguratorRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvTaxExportRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvTaxExportRedlist() - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportRedlist
 
CsvTaxExportStateRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvTaxExportStateRedlist(CsvTaxExportConfiguratorRedlist) - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportStateRedlist
 
CsvTaxExportTransformerRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvTaxExportTransformerRedlist() - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportTransformerRedlist
 
CsvTaxRecordRedlist - Class in eu.etaxonomy.cdm.io.csv.redlist.out
 
CsvTaxRecordRedlist(CsvMetaDataRecordRedlist, CsvTaxExportConfiguratorRedlist) - Constructor for class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxRecordRedlist
 
CUBAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CULTIVAR() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
cultivar - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
CULTIVARGROUP() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
cultivarMarker - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
cultivarMarkerPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
cultivarPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
CultivarPlantName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for cultivars (cultivated plants).
CultivarPlantName() - Constructor for class eu.etaxonomy.cdm.model.name.CultivarPlantName
Class constructor: creates a new cultivar taxon name instance only containing the default cache strategy.
CultivarPlantName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.CultivarPlantName
Class constructor: creates a new cultivar taxon name instance only containing its rank, its homotypical group and the default cache strategy.
CULTIVATED() - Static method in class eu.etaxonomy.cdm.model.description.PresenceTerm
 
CULTIVATED_REPORTED_IN_ERROR() - Static method in class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
CULTIVATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "cultivation" feature.
CURRENT_OBJECT_ID - Static variable in class eu.etaxonomy.cdm.io.common.DbImportStateBase
 
CURRENT_OBJECT_NAMESPACE - Static variable in class eu.etaxonomy.cdm.io.common.DbImportStateBase
 
CURRENT_VIEW - Static variable in class eu.etaxonomy.cdm.model.view.AuditEvent
 
currentAuthentiationHasPermissions(CdmBase, EnumSet<CRUD>) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
currentIndex - Variable in class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
 
cursor - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.ResumptionToken
 
CUSHITIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CycleSetAcess - Class in net.sf.json
 
CycleSetAcess() - Constructor for class net.sf.json.CycleSetAcess
 
CYPRUSREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
CZECH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CZECHREPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 

D

DAKOTA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
DANISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
dao - Variable in class eu.etaxonomy.cdm.api.service.DeleteResult.PersistPair
 
dao - Variable in class eu.etaxonomy.cdm.api.service.ServiceBase
 
DaoBase - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
DaoBase() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
DARGWA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
data - Variable in class eu.etaxonomy.cdm.common.TreeNode
 
DatabaseMapping - Class in eu.etaxonomy.cdm.io.dwca.in
TODO inwork, currently it works with H2
DatabaseMapping(String) - Constructor for class eu.etaxonomy.cdm.io.dwca.in.DatabaseMapping
 
databasePath - Variable in class eu.etaxonomy.cdm.database.LocalH2
path, where database should be stored in the file system
databasePath - Variable in class eu.etaxonomy.cdm.database.LocalHsqldb
path, where database should be stored in the file system
DatabaseSchemaMismatchException - Exception in eu.etaxonomy.cdm.database
 
DatabaseSchemaMismatchException() - Constructor for exception eu.etaxonomy.cdm.database.DatabaseSchemaMismatchException
 
DatabaseSchemaMismatchException(String) - Constructor for exception eu.etaxonomy.cdm.database.DatabaseSchemaMismatchException
 
DatabaseSchemaMismatchException(Throwable) - Constructor for exception eu.etaxonomy.cdm.database.DatabaseSchemaMismatchException
 
DatabaseSchemaMismatchException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.database.DatabaseSchemaMismatchException
 
DatabaseServiceHibernateImpl - Class in eu.etaxonomy.cdm.api.service
 
DatabaseServiceHibernateImpl() - Constructor for class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
DatabaseTypeEnum - Enum in eu.etaxonomy.cdm.database
 
DatabaseTypeNotSupportedException - Exception in eu.etaxonomy.cdm.database.update
 
DatabaseTypeNotSupportedException() - Constructor for exception eu.etaxonomy.cdm.database.update.DatabaseTypeNotSupportedException
 
DatabaseTypeNotSupportedException(String) - Constructor for exception eu.etaxonomy.cdm.database.update.DatabaseTypeNotSupportedException
 
DatabaseTypeNotSupportedException(Throwable) - Constructor for exception eu.etaxonomy.cdm.database.update.DatabaseTypeNotSupportedException
 
DatabaseTypeNotSupportedException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.database.update.DatabaseTypeNotSupportedException
 
DataChangeNoRollbackException - Exception in eu.etaxonomy.cdm.api.service.exception
Base class for all exceptions occurring during data change actions within the service layer.
DataChangeNoRollbackException() - Constructor for exception eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException
 
DataChangeNoRollbackException(String) - Constructor for exception eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException
 
DataController - Class in eu.etaxonomy.cdm.remote.service
Controller which accepts requests for the data representation of an object with a given lsid.
DataController() - Constructor for class eu.etaxonomy.cdm.remote.service.DataController
 
dataGeneralizations - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
DataSet - Class in eu.etaxonomy.cdm.io.jaxb
 
DataSet() - Constructor for class eu.etaxonomy.cdm.io.jaxb.DataSet
 
datasetID - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
datasetName - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
dataSource() - Method in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
DATASOURCE_BEAN_POSTFIX - Static variable in class eu.etaxonomy.cdm.database.CdmPersistentDataSource
 
DATASOURCE_BEANDEF_DEFAULT - Static variable in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
DATASOURCE_FILE_NAME - Static variable in class eu.etaxonomy.cdm.database.CdmPersistentDataSource
 
DATASOURCE_PATH - Static variable in class eu.etaxonomy.cdm.database.CdmPersistentDataSource
 
DataSourceBeanLoader - Class in eu.etaxonomy.cdm.database
 
DataSourceBeanLoader() - Constructor for class eu.etaxonomy.cdm.database.DataSourceBeanLoader
 
DataSourceConfigurer - Class in eu.etaxonomy.cdm.remote.config
The DataSourceConfigurer can be used as a replacement for a xml configuration in the application context.
DataSourceConfigurer() - Constructor for class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
DatasourceContextHandlerInterceptor - Class in eu.etaxonomy.cdm.remote.controller.interceptor
Deprecated. 
DatasourceContextHandlerInterceptor() - Constructor for class eu.etaxonomy.cdm.remote.controller.interceptor.DatasourceContextHandlerInterceptor
Deprecated.  
DataSourceInfo - Class in eu.etaxonomy.cdm.database
 
DataSourceInfo(AbstractDriverBasedDataSource) - Constructor for class eu.etaxonomy.cdm.database.DataSourceInfo
 
dataSourceName - Variable in class eu.etaxonomy.cdm.database.CdmPersistentDataSource
 
DataSourceNotFoundException - Exception in eu.etaxonomy.cdm.database
 
DataSourceNotFoundException() - Constructor for exception eu.etaxonomy.cdm.database.DataSourceNotFoundException
 
DataSourceNotFoundException(String) - Constructor for exception eu.etaxonomy.cdm.database.DataSourceNotFoundException
 
DataSourceNotFoundException(Throwable) - Constructor for exception eu.etaxonomy.cdm.database.DataSourceNotFoundException
 
DataSourceNotFoundException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.database.DataSourceNotFoundException
 
dataSourceProperties() - Method in class eu.etaxonomy.cdm.remote.config.DataSourceConfigurer
 
DataSourceProperties - Class in eu.etaxonomy.cdm.remote.config
 
DataSourceProperties() - Constructor for class eu.etaxonomy.cdm.remote.config.DataSourceProperties
 
DataSourceReloader - Class in eu.etaxonomy.cdm.database
 
DataSourceReloader() - Constructor for class eu.etaxonomy.cdm.database.DataSourceReloader
 
DATE - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DATE_FORMAT_NOW - Static variable in class eu.etaxonomy.cdm.print.out.PublishOutputModuleBase
The date format used by #generateFilenameWithDate(String, String)
DATE_STRING_UUID - Static variable in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
DATE_TYPE_CODE - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DATE_TYPE_STRING - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
dateIdentified - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
DATES - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DATES - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
datestamp - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Header
 
DateTimeAdapter - Class in eu.etaxonomy.cdm.jaxb
 
DateTimeAdapter() - Constructor for class eu.etaxonomy.cdm.jaxb.DateTimeAdapter
 
DateTimeBridge - Class in eu.etaxonomy.cdm.hibernate.search
 
DateTimeBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.DateTimeBridge
 
DateTimeConverter - Class in eu.etaxonomy.cdm.remote.dto.assembler.converter
 
DateTimeConverter() - Constructor for class eu.etaxonomy.cdm.remote.dto.assembler.converter.DateTimeConverter
 
DateTimeEditor - Class in eu.etaxonomy.cdm.remote.editor
 
DateTimeEditor() - Constructor for class eu.etaxonomy.cdm.remote.editor.DateTimeEditor
 
DateTimeJSONValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
 
DateTimeJSONValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.DateTimeJSONValueProcessor
 
day - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
DAY_TYPE - Static variable in class eu.etaxonomy.cdm.model.common.TimePeriod
 
DB2 - Static variable in class eu.etaxonomy.cdm.io.common.Source
 
Db2DatabaseType - Class in eu.etaxonomy.cdm.database.types
!! UNTESTED !! Db2 in use with Universal Driver (db2jcc.jar)
Db2DatabaseType() - Constructor for class eu.etaxonomy.cdm.database.types.Db2DatabaseType
 
DbAnnotationMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbAnnotationMapper(String, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbAnnotationMapper
 
DbAreaMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps an area to a database key or cache field.
DbAreaMapper(Class<? extends CdmBase>, String, Class<?>[], String, String, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbAreaMapper
 
DbBooleanMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbCitationAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
 
DbClobMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbConstantMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps to a constant value.
DbConstantMapper(String, int, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbConstantMapper
 
DbDateMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbDescriptionElementFkAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
DbDescriptionElementTaxonMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbDescriptionElementTaxonMapper(String, boolean, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbDescriptionElementTaxonMapper
 
DbDistributionStatusMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps distribution to a database foreign key or cache field.
DbDistributionStatusMapper(String, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbDistributionStatusMapper
 
DbExportBase<CONFIG extends DbExportConfiguratorBase<STATE,TRANSFORM>,STATE extends ExportStateBase<CONFIG,TRANSFORM>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common
 
DbExportBase() - Constructor for class eu.etaxonomy.cdm.io.common.DbExportBase
 
DbExportConfiguratorBase<STATE extends ExportStateBase,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common
 
DbExportConfiguratorBase(TRANSFORM) - Constructor for class eu.etaxonomy.cdm.io.common.DbExportConfiguratorBase
 
DbExportConfiguratorBase.IdType - Enum in eu.etaxonomy.cdm.io.common
 
DbExportIgnoreMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
This mapper does not change any import object, but keeps the information that a database attribute needs to be mapped but is not yet mapped.
DbExportIgnoreMapper(String, String, Object, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbExportIgnoreMapper
 
DbExportMapperBase<STATE extends DbExportStateBase<?,IExportTransformer>> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbExportMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbExportMapperBase
 
DbExportNotYetImplementedMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
This mapper does not change any import object, but keeps the information that a database attribute needs to be mapped but is not yet mapped.
DbExportNotYetImplementedMapper(String, String, Object, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbExportNotYetImplementedMapper
 
DbExportStateBase<CONFIG extends DbExportConfiguratorBase<? extends DbExportStateBase<CONFIG,TRANSFORM>,TRANSFORM>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common
 
DbExportStateBase(CONFIG) - Constructor for class eu.etaxonomy.cdm.io.common.DbExportStateBase
 
DbExtensionMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbExtensionMapper(ExtensionType, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbExtensionMapper
 
dbIdAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase
 
dbIdMap - Variable in class eu.etaxonomy.cdm.io.common.DbExportStateBase
 
DbIgnoreMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This mapper does not change any import object, but keeps the information that a database attribute does not need to be mapped.
DbIgnoreMapper(String, String, Object, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbIgnoreMapper
 
DbImageMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps text data to a database string field.
DbImageMapper(Language, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbImageMapper
 
DbImportAnnotationCreationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
Object creation mapper which creates a marker.
DbImportAnnotationCreationMapper(String, String, String, Language, String, AnnotationType) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationCreationMapper
 
DbImportAnnotationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This class maps a database attribute to CDM annotation added to the target class TODO maybe this class should not inherit from DbSingleAttributeImportMapperBase as it does not map to a single attribute
DbImportBase<STATE extends DbImportStateBase<CONFIG,STATE>,CONFIG extends DbImportConfiguratorBase<STATE>> - Class in eu.etaxonomy.cdm.io.common
 
DbImportBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.DbImportBase
 
DbImportCommonNameCreationMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportCommonNameCreationMapper(String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportCommonNameCreationMapper
 
DbImportConfiguratorBase<STATE extends DbImportStateBase> - Class in eu.etaxonomy.cdm.io.common
 
DbImportConfiguratorBase(Source, ICdmDataSource, NomenclaturalCode, IInputTransformer) - Constructor for class eu.etaxonomy.cdm.io.common.DbImportConfiguratorBase
 
DbImportDefinedTermCreationMapperBase<TERM extends DefinedTermBase,TERMED extends VersionableEntity,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
This class either retrieves a defined Term from the database or creates and saves it in the database.
DbImportDefinedTermCreationMapperBase(String, String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
DbImportDescriptionElementCreationMapperBase<ELEMENT extends DescriptionElementBase,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportDescriptionElementCreationMapperBase(String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
 
DbImportDescriptionElementSourceCreationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This mapper creates an description element source that is added to the according description element.
DbImportDescriptionElementSourceCreationMapper(String, String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
DbImportDistributionCreationMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
This Mapper creates a distribution and adds it to a taxon.
DbImportDistributionCreationMapper(String, String, String, String, PresenceAbsenceTermBase) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportDistributionCreationMapper
 
DbImportExtensionCreationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
Object creation mapper which creates a extensions.
DbImportExtensionCreationMapper(String, String, String, String, ExtensionType) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionCreationMapper
 
DbImportExtensionMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This class maps a database attribute to CDM extension added to the target class TODO maybe this class should not inherit from DbSingleAttributeImportMapperBase as it does not map to a single attribute
DbImportExtensionTypeCreationMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
This class retrives or creates an existing or a new extension type.
DbImportExtensionTypeCreationMapper(String, String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionTypeCreationMapper
 
DbImportFeatureCreationMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
This class retrives or creates an existing or a new feature.
DbImportFeatureCreationMapper(String, String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportFeatureCreationMapper
 
DbImportImageCreationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportImageCreationMapper(String, String, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportImageCreationMapper
 
DbImportImageGalleryMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This class maps a database attribute to CDM extension added to the target class TODO maybe this class should not inherit from DbSingleAttributeImportMapperBase as it does not map to a single attribute
DbImportLsidMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportLsidMapper(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportLsidMapper
 
DbImportMapperBase<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMapperBase
 
DbImportMapping<STATE extends DbImportStateBase,CONFIG extends IImportConfigurator> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportMapping() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMapping
 
DbImportMarkerCreationMapper - Class in eu.etaxonomy.cdm.io.common.mapping
Object creation mapper which creates a marker.
DbImportMarkerCreationMapper(String, String, String, String, MarkerType) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMarkerCreationMapper
 
DbImportMarkerMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This class maps a database attribute to CDM extension added to the target class TODO maybe this class should not inherit from DbSingleAttributeImportMapperBase as it does not map to a single attribute
DbImportMediaMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This class adds a Media to a DescriptionElementBase
DbImportMediaMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMediaMapper
 
DbImportMethodMapper<CDMBASE extends VersionableEntity,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportMethodMapper(Class<?>, Object, String, Class<?>...) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMethodMapper
 
DbImportMultiAttributeMapperBase<CDMBASE extends CdmBase,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportMultiAttributeMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMultiAttributeMapperBase
 
DbImportMultiLanguageTextMapper<CDMBASE extends CdmBase> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportMultiLanguageTextMapper(String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportMultiLanguageTextMapper
 
DbImportNameTypeDesignationMapper<STATE extends DbImportStateBase<?,?>,T extends IDbImportTransformed> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportNameTypeDesignationMapper(String, String, NameTypeDesignationStatus, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportNameTypeDesignationMapper
 
DbImportObjectCreationMapper<ANNOTATABLE extends AnnotatableEntity,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportObjectCreationMapper(IMappingImport<ANNOTATABLE, STATE>, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapper
 
DbImportObjectCreationMapperBase<CREATE extends VersionableEntity,STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportObjectCreationMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase
 
DbImportObjectMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportObjectMapper(String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectMapper
 
DbImportStateBase<CONFIG extends DbImportConfiguratorBase,STATE extends DbImportStateBase> - Class in eu.etaxonomy.cdm.io.common
 
DbImportStateBase(CONFIG) - Constructor for class eu.etaxonomy.cdm.io.common.DbImportStateBase
 
DbImportStringMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportStringMapper(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportStringMapper
 
DbImportSupplementCreationMapperBase<SUPPLEMENT extends VersionableEntity,SUPPLEMENTABLE extends AnnotatableEntity,STATE extends DbImportStateBase<?,?>,TYPE extends DefinedTermBase> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportSupplementCreationMapperBase(String, String, String, String, TYPE) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
DbImportSynonymMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportSynonymMapper(String, String, TaxonRelationshipType, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportSynonymMapper
 
DbImportTaxIncludedInMapper<STATE extends DbImportStateBase<DbImportConfiguratorBase<STATE>,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportTaxIncludedInMapper(String, String, String, String, String, String, String, String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportTaxIncludedInMapper
 
DbImportTextDataCreationMapper<STATE extends DbImportStateBase<?,?>> - Class in eu.etaxonomy.cdm.io.common.mapping
This Mapper creates a text data element and adds it to a taxon.
DbImportTextDataCreationMapper(String, String, String, String, String, Language, Feature, TextFormat) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
DbImportTruncatedStringMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportTruncatedStringMapper(String, String, Object, boolean, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportTruncatedStringMapper
 
DbImportUuidMapper - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbImportUuidMapper(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbImportUuidMapper
 
DbIntegerAnnotationMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbIntegerExtensionMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbLabelAbbrevAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
dbLabelAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
DbLanguageMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps a language to a database key or cache field.
DbLanguageMapper(Class<? extends CdmBase>, String, Class<?>[], String, String, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbLanguageMapper
 
DbLastActionMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbMarkerMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbMicroCitationAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
 
dbMicroReferenceAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
dbName - Variable in class eu.etaxonomy.cdm.database.LocalH2
database name
dbName - Variable in class eu.etaxonomy.cdm.database.LocalHsqldb
database name
DbNotYetImplementedMapper - Class in eu.etaxonomy.cdm.io.common.mapping
This mapper does not change any import object, but keeps the information that a database attribute needs to be mapped but is not yet mapped.
DbNotYetImplementedMapper(String, String, Object, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbNotYetImplementedMapper
 
DbNullMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbNullMapper(String, int) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbNullMapper
 
DbObjectMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbObjectMapper(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbObjectMapper
 
DbOriginalNameMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbOriginalNameMapper(String, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbOriginalNameMapper
 
dbReferenceFkAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
DbSchemaValidation - Enum in eu.etaxonomy.cdm.database
 
DbSequenceMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbSequenceMapper(String, int) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbSequenceMapper
 
DbSimpleFilterMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
This mapper removes objects from the stream of objects to be mapped.
DbSimpleFilterMapper(String, String, Object, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbSimpleFilterMapper
 
DbSingleAttributeExportMapperBase<STATE extends DbExportStateBase<?,IExportTransformer>> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbSingleAttributeExportMapperBase(String, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbSingleAttributeExportMapperBase
 
DbSingleAttributeExportMapperBase(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbSingleAttributeExportMapperBase
 
DbSingleAttributeImportMapperBase<STATE extends DbImportStateBase<?,?>,CDM_BASE extends CdmBase> - Class in eu.etaxonomy.cdm.io.common.mapping
 
DbSingleAttributeImportMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
DbSingleAttributeImportMapperBase(String, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
DbSingleAttributeImportMapperBase(String, String, Object, boolean) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
DbSingleSourceMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps distribution to a database foreign key or cache field.
DbSingleSourceMapper(String, EnumSet<DbSingleSourceMapper.EXCLUDE>, boolean, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbSingleSourceMapper
 
DbSingleSourceMapper.EXCLUDE - Enum in eu.etaxonomy.cdm.io.common.mapping.out
 
DbStringMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbSupplementedObjectAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
dbSupplementValueAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
dbTaxonFkAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
 
dbTermAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDefinedTermCreationMapperBase
 
dbTextAttribute - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
DbTextDataMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
Maps text data to a database string field.
DbTextDataMapper(Language, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.DbTextDataMapper
 
DbTimePeriodMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
dbType - Variable in enum eu.etaxonomy.cdm.database.DatabaseTypeEnum
 
DbUriMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DbUserMapper - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
DC_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.TDWGNamespacePrefixMapper
 
DCTERMS_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.TDWGNamespacePrefixMapper
 
dd - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
decimalLatitude - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
decimalLongitude - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
decreaseIndex(OrderedTermVocabulary<T>) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
Deprecated. To be used only by OrderedTermVocabulary
deduplicate(Class<? extends T>, IMatchStrategy, IMergeStrategy) - Method in class eu.etaxonomy.cdm.api.service.IdentifiableServiceBase
 
deduplicate(Class<? extends T>, IMatchStrategy, IMergeStrategy) - Method in interface eu.etaxonomy.cdm.api.service.IIdentifiableEntityService
This method tries to deduplicate all objects of a certain class by first trying to find matchabel objects and merging them in a second step.
deepCopy(Object) - Method in class eu.etaxonomy.cdm.hibernate.PartialUserType
 
deepCopy(Object) - Method in class eu.etaxonomy.cdm.hibernate.URIUserType
 
deepCopy(Object) - Method in class eu.etaxonomy.cdm.hibernate.UUIDUserType
 
deepCopy(Object) - Method in class eu.etaxonomy.cdm.hibernate.WSDLDefinitionUserType
 
DEFAULT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
DEFAULT_APPLICATION_CONTEXT_RESOURCE - Static variable in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
DEFAULT_APPLICATION_CONTEXT_RESOURCE - Static variable in class eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController
 
DEFAULT_AUTHOR_FORENAME - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DEFAULT_AUTHOR_NAME - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DEFAULT_AUTHOR_SURNAME - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
DEFAULT_DRIVER_CLASS_NAME - Variable in class eu.etaxonomy.cdm.database.LocalH2
default driver class name
DEFAULT_DRIVER_CLASS_NAME - Variable in class eu.etaxonomy.cdm.database.LocalHsqldb
default driver class name
DEFAULT_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.remote.controller.AbstractController
 
DEFAULT_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.remote.controller.ClassificationListController
 
DEFAULT_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.remote.controller.OccurrenceController
 
DEFAULT_IO_APPLICATION_CONTEXT_RESOURCE - Static variable in class eu.etaxonomy.cdm.io.common.CdmDefaultIOBase
 
DEFAULT_PAGE_SIZE - Static variable in class eu.etaxonomy.cdm.remote.controller.AbstractController
 
DEFAULT_PAGESIZE - Static variable in class eu.etaxonomy.cdm.remote.controller.util.PagerParameters
 
DEFAULT_SEARCH_TYPE - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Default name search type
defaultBeanInitializer - Variable in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
defaultBeanInitializer - Variable in class eu.etaxonomy.cdm.persistence.dao.hibernate.description.IdentificationKeyDaoImpl
 
DefaultCategoricalDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
DefaultCategoricalDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.DefaultCategoricalDescriptionBuilder
 
defaultCollectionMatchMode - Variable in class eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy
 
defaultCollectionMatchMode - Static variable in interface eu.etaxonomy.cdm.strategy.match.IMatchStrategy
 
defaultCollectionMergeMode - Variable in class eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy
 
defaultDbSchemaValidation - Static variable in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
DefaultErrorHandler - Class in eu.etaxonomy.cdm.io.jaxb
 
DefaultErrorHandler() - Constructor for class eu.etaxonomy.cdm.io.jaxb.DefaultErrorHandler
 
defaultFeature - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
DefaultFeatureTreeUuid - Static variable in interface eu.etaxonomy.cdm.persistence.dao.description.IFeatureTreeDao
 
defaultField - Variable in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase
 
defaultFormat - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
DefaultImportState<CONFIG extends ImportConfiguratorBase> - Class in eu.etaxonomy.cdm.io.common
 
DefaultImportState(CONFIG) - Constructor for class eu.etaxonomy.cdm.io.common.DefaultImportState
 
defaultLanguage - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper
 
defaultMatchMatchMode - Variable in class eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy
 
defaultMatchMatchMode - Static variable in interface eu.etaxonomy.cdm.strategy.match.IMatchStrategy
 
defaultMatchMode - Variable in class eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy
 
defaultMatchMode - Static variable in interface eu.etaxonomy.cdm.strategy.match.IMatchStrategy
 
DefaultMatchStrategy - Class in eu.etaxonomy.cdm.strategy.match
 
DefaultMatchStrategy(Class<? extends IMatchable>) - Constructor for class eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy
 
defaultMergeMode - Variable in class eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy
 
DefaultMergeStrategy - Class in eu.etaxonomy.cdm.strategy.merge
 
DefaultMergeStrategy(Class<? extends CdmBase>) - Constructor for class eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy
 
defaultMetaData() - Static method in class eu.etaxonomy.cdm.model.common.CdmMetaData
 
defaultOrderHintsFor(Class<? extends CdmBase>) - Static method in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
DefaultPagerImpl<T> - Class in eu.etaxonomy.cdm.api.service.pager.impl
 
DefaultPagerImpl(Integer, Integer, Integer, List<T>) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl
Constructor
DefaultPagerImpl(Integer, Integer, Integer, List<T>, String) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl
Constructor
defaultPort - Variable in class eu.etaxonomy.cdm.database.types.SqlServer2005DatabaseType
 
DefaultProgressMonitor - Class in eu.etaxonomy.cdm.common.monitor
This is a console style progress monitor with prints the progress information to configured Logger with level Level.INFO
DefaultProgressMonitor() - Constructor for class eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor
 
DefaultQuantitativeDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
DefaultQuantitativeDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.DefaultQuantitativeDescriptionBuilder
 
DefaultRelatedPageConverter - Class in eu.etaxonomy.cdm.remote.dto.assembler.converter
Default page converter implementation that makes a gross assumption that the metadata are being served on the same server as the human-readable page, and that the urls map to {relatedPagePrefix}{param}/{uuid}
DefaultRelatedPageConverter() - Constructor for class eu.etaxonomy.cdm.remote.dto.assembler.converter.DefaultRelatedPageConverter
 
DefaultTcsXmlPlaceholders - Class in eu.etaxonomy.cdm.io.tcsxml
 
DefaultTcsXmlPlaceholders() - Constructor for class eu.etaxonomy.cdm.io.tcsxml.DefaultTcsXmlPlaceholders
 
DefaultTermInitializer - Class in eu.etaxonomy.cdm.model.common
 
DefaultTermInitializer() - Constructor for class eu.etaxonomy.cdm.model.common.DefaultTermInitializer
 
defaultValue - Variable in class eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase
 
DefinedTerm - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
DefinedTerm() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.DefinedTerm
 
DefinedTermBase<T extends DefinedTermBase> - Class in eu.etaxonomy.cdm.model.common
workaround for enumerations, base type according to TDWG.
DefinedTermBase() - Constructor for class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
DefinedTermBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
DefinedTermBaseClassBridge - Class in eu.etaxonomy.cdm.hibernate.search
 
DefinedTermBaseClassBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.DefinedTermBaseClassBridge
 
definedTermDao - Variable in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
definedTermDao - Variable in class eu.etaxonomy.cdm.api.service.LocationServiceImpl
 
DefinedTermDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
DefinedTermDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl
 
definition - Variable in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
degree - Variable in class eu.etaxonomy.cdm.model.location.Point.Sexagesimal
 
degreeSymbol - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
DELAWARE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
delayedNotify() - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmPostDataChangeObservableListener
 
delete(Object) - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
 
delete(TaxonNameBase, NameDeletionConfigurator) - Method in interface eu.etaxonomy.cdm.api.service.INameService
Deletes a name.
delete(T) - Method in interface eu.etaxonomy.cdm.api.service.IService
Delete an existing persistent object
delete(DefinedTermBase, TermDeletionConfigurator) - Method in interface eu.etaxonomy.cdm.api.service.ITermService
Delete the given term according to the given delete configuration.
delete(TaxonNameBase) - Method in class eu.etaxonomy.cdm.api.service.NameServiceImpl
 
delete(TaxonNameBase, NameDeletionConfigurator) - Method in class eu.etaxonomy.cdm.api.service.NameServiceImpl
 
delete(T) - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
 
delete(DefinedTermBase) - Method in class eu.etaxonomy.cdm.api.service.TermServiceImpl
Deprecated. use TermServiceImpl.delete(DefinedTermBase, TermDeletionConfigurator) instead to allow DeleteResult return type
delete(DefinedTermBase, TermDeletionConfigurator) - Method in class eu.etaxonomy.cdm.api.service.TermServiceImpl
 
delete(User) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
delete(CdmPersistentDataSource) - Static method in class eu.etaxonomy.cdm.database.CdmPersistentDataSource
Deletes a dataSource
delete() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Remove this taxonNode From its taxonomic parent
delete(T) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
 
delete(CdmBase) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao
 
delete(T) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
delete(Marker) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.MarkerDaoImpl
 
delete(TaxonNameBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl
 
delete(Classification) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.ClassificationDaoHibernateImpl
 
delete(TaxonBase) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
Sets the taxonomic parent to null.
delete(TaxonNode) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonNodeDaoHibernateImpl
 
DELETE - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
deleteChildNode(TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
deleteChildNode(TaxonNode) - Method in interface eu.etaxonomy.cdm.model.taxon.ITreeNode
This recursively removes all child nodes from this node and from this taxonomic view.
deleteChildNode(TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
DeleteConfiguratorBase - Class in eu.etaxonomy.cdm.api.service.config
Base class for delete configurators.
DeleteConfiguratorBase() - Constructor for class eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase
 
deleteDescriptionElement(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
FIXME Candidate for harmonization descriptionElementService.delete
deleteDescriptionElement(DescriptionElementBase) - Method in interface eu.etaxonomy.cdm.api.service.IDescriptionService
Delete an existing description element
deletedObjects - Variable in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
DeletedRecord - Enum in eu.etaxonomy.cdm.remote.dto.oaipmh
Java class for deletedRecordType.
deletedRecord - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
deleteForeignKeys(CdmDataSource) - Method in class eu.etaxonomy.cdm.database.types.SqlServer2005DatabaseType
Deletes all foreign keys between tables in a sql server database.
deleteGroup(String) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
deleteGroup(String) - Method in class eu.etaxonomy.cdm.api.service.UserService
Deprecated. 
deleteObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
deleteObservers() - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
DeleteResult - Class in eu.etaxonomy.cdm.api.service
This class represents the result of a delete action.
DeleteResult() - Constructor for class eu.etaxonomy.cdm.api.service.DeleteResult
 
DeleteResult.DeleteStatus - Enum in eu.etaxonomy.cdm.api.service
 
DeleteResult.PersistPair - Class in eu.etaxonomy.cdm.api.service
 
DeleteResult.PersistPair() - Constructor for class eu.etaxonomy.cdm.api.service.DeleteResult.PersistPair
 
deleteRow() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
deleteSynonym(Synonym, Taxon, boolean, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Removes a synonym.

In detail it removes all synonym relationship to the given taxon or to all taxa if taxon is null the synonym concept if it is not referenced by any synonym relationship anymore

If removeNameIfPossible is true it also removes the synonym name if it is not used in any other context (part of a concept, in DescriptionElementSource, part of a name relationship, used inline, ...)

If newHomotypicGroupIfNeeded is true and the synonym name is not deleted and the name is homotypic to the taxon the name is moved to a new homotypical group.

If synonym is null the method has no effect.
deleteSynonym(Synonym, Taxon, boolean, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
deleteSynonymRelationships(Synonym, Taxon) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Deletes all synonym relationships of a given synonym.
deleteSynonymRelationships(Synonym) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
 
deleteSynonymRelationships(Synonym, Taxon) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
deleteSynonymRelationships(Synonym) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
deleteSynonymRelationships(Synonym, Taxon) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
deleteSynonymRelationships(Synonym, Taxon) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
Deletes all synonym relationships of a given synonym.
deleteTaxon(Taxon, TaxonDeletionConfigurator) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Deletes a taxon from the underlying database according to the given configurator.
deleteTaxon(Taxon, TaxonDeletionConfigurator) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
deleteTemporaryMatchers() - Method in class eu.etaxonomy.cdm.strategy.match.Matching
 
deleteTypeDesignation(TaxonNameBase, TypeDesignationBase) - Method in interface eu.etaxonomy.cdm.api.service.INameService
Removes the given type designation from the given taxon name and deletes it from the database if it is not connected to any other name.
deleteTypeDesignation(TaxonNameBase, TypeDesignationBase) - Method in class eu.etaxonomy.cdm.api.service.NameServiceImpl
 
deleteUser(String) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
DeltaTextDataProcessor - Class in eu.etaxonomy.cdm.api.service
 
DeltaTextDataProcessor() - Constructor for class eu.etaxonomy.cdm.api.service.DeltaTextDataProcessor
 
DENMARKKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
DENOMINATIONCLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
deproxy(Object, Class<T>) - Static method in class eu.etaxonomy.cdm.hibernate.HibernateProxyHelper
 
deproxy(Object) - Static method in class eu.etaxonomy.cdm.hibernate.HibernateProxyHelper
Unwrap the target instance from the proxy.
deproxy(Object, Class<T>) - Static method in class eu.etaxonomy.cdm.model.common.CdmBase
These methods are present due to HHH-1517 - that in a one-to-many relationship with a superclass at the "one" end, the proxy created by hibernate is the superclass, and not the subclass, resulting in a classcastexception when you try to cast it.
depth - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
depth - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
DerivationEvent - Class in eu.etaxonomy.cdm.model.occurrence
 
DerivationEvent() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Constructor
derivationEvents - Variable in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
DerivationEventType - Class in eu.etaxonomy.cdm.model.occurrence
 
DerivationEventType() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Constructor
DerivationEventType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Constructor
derivatives - Variable in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
DerivedUnit - Class in eu.etaxonomy.cdm.model.occurrence
 
DerivedUnit() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnit
Constructor
DerivedUnitBase<S extends IIdentifiableEntityCacheStrategy> - Class in eu.etaxonomy.cdm.model.occurrence
http://www.bgbm.org/biodivinf/docs/CollectionModel/ReprintTNR.pdf http://www.bgbm.org/biodivinf/docs/CollectionModel/
Type figures are derived units with at least a figure object in media
DerivedUnitBase() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
Constructor
DerivedUnitBase(FieldObservation) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
create new unit derived from an existing field observation
DerivedUnitBase(GatheringEvent) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
create new unit derived from an existing gathering event, thereby creating a new empty field observation
DerivedUnitFacade - Class in eu.etaxonomy.cdm.api.facade
This class is a facade to the eu.etaxonomy.cdm.model.occurrence package from a specimen based view.
DerivedUnitFacade.DerivedUnitType - Enum in eu.etaxonomy.cdm.api.facade
Enum that defines the class the "Specimen" belongs to.
DerivedUnitFacadeBeanProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
DerivedUnitFacadeBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.DerivedUnitFacadeBeanProcessor
 
DerivedUnitFacadeCacheStrategy - Class in eu.etaxonomy.cdm.api.facade
 
DerivedUnitFacadeCacheStrategy() - Constructor for class eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy
 
DerivedUnitFacadeConfigurator - Class in eu.etaxonomy.cdm.api.facade
 
DerivedUnitFacadeController - Class in eu.etaxonomy.cdm.remote.controller
 
DerivedUnitFacadeController() - Constructor for class eu.etaxonomy.cdm.remote.controller.DerivedUnitFacadeController
 
DerivedUnitFacadeFieldObservationCacheStrategy - Class in eu.etaxonomy.cdm.api.facade
 
DerivedUnitFacadeFieldObservationCacheStrategy() - Constructor for class eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeFieldObservationCacheStrategy
 
DerivedUnitFacadeNotSupportedException - Exception in eu.etaxonomy.cdm.api.facade
 
DerivedUnitFacadeNotSupportedException(String) - Constructor for exception eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException
 
DerivedUnitFacadeNotSupportedException(Throwable) - Constructor for exception eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException
 
DerivedUnitFacadeNotSupportedException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException
 
DerivedUnitFacadePortalController - Class in eu.etaxonomy.cdm.remote.controller
 
DerivedUnitFacadePortalController() - Constructor for class eu.etaxonomy.cdm.remote.controller.DerivedUnitFacadePortalController
 
desc(String, String) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
DESCRIPTION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "description" feature.
Description - Class in eu.etaxonomy.cdm.remote.dto.oaipmh
The descriptionType is used for the description element in Identify and for setDescription element in ListSets.
Description() - Constructor for class eu.etaxonomy.cdm.remote.dto.oaipmh.Description
 
description - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
Description - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
Description() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.Description
 
DESCRIPTION_ELEMENT_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.remote.controller.TaxonPortalController
 
DESCRIPTION_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.remote.controller.DescriptionPortalController
 
DESCRIPTION_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
DescriptionBase<S extends IIdentifiableEntityCacheStrategy> - Class in eu.etaxonomy.cdm.model.description
The upmost (abstract) class for a description as a whole (with possibly several elementary information data) for a specimen, a taxon or even a taxon name.
DescriptionBase() - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionBase
 
DescriptionBaseClassBridge - Class in eu.etaxonomy.cdm.hibernate.search
This class bridge is needed to overcome limitations in hibernate search with polymorphism on associations.
DescriptionBaseClassBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.DescriptionBaseClassBridge
 
DescriptionBaseVoter - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
 
DescriptionBaseVoter() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.DescriptionBaseVoter
 
DescriptionBuilder<T extends DescriptionElementBase> - Class in eu.etaxonomy.cdm.api.service
Abstract class that defines the basic element for constructing natural language descriptions.
DescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.DescriptionBuilder
 
DescriptionController - Class in eu.etaxonomy.cdm.remote.controller
TODO write controller documentation
DescriptionController() - Constructor for class eu.etaxonomy.cdm.remote.controller.DescriptionController
 
DescriptionDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.description
 
DescriptionDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionDaoImpl
 
DescriptionElementBase - Class in eu.etaxonomy.cdm.model.description
The upmost (abstract) class for a piece of information) about a specimen, a taxon or even a taxon name.
DescriptionElementBase() - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Class constructor: creates a new empty description element instance.
DescriptionElementBase(Feature) - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Class constructor: creates a new description element instance with the given feature that is described or measured.
descriptionElementDao - Variable in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
DescriptionElementDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.description
 
DescriptionElementDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.description.DescriptionElementDaoImpl
 
descriptionElementNamespace - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementSourceCreationMapper
 
DescriptionElementSource - Class in eu.etaxonomy.cdm.model.common
This class represents an IOriginalSource that can be used with description elements.
DescriptionElementVoter - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
 
DescriptionElementVoter() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.DescriptionElementVoter
 
DescriptionListController - Class in eu.etaxonomy.cdm.remote.controller
TODO write controller documentation
DescriptionListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.DescriptionListController
 
DescriptionPortalController - Class in eu.etaxonomy.cdm.remote.controller
TODO write controller documentation
DescriptionPortalController() - Constructor for class eu.etaxonomy.cdm.remote.controller.DescriptionPortalController
 
DESCRIPTIONS - Static variable in interface eu.etaxonomy.cdm.print.IXMLElements
 
DescriptionServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
DescriptionServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
descriptionType2feature(String) - Static method in class eu.etaxonomy.cdm.io.taxonx.TaxonXTransformer
Creates an cdm-NomenclaturalCode by the tcs NomenclaturalCode
DescriptionUtility - Class in eu.etaxonomy.cdm.api.utility
 
DescriptionUtility() - Constructor for class eu.etaxonomy.cdm.api.utility.DescriptionUtility
 
DescriptiveSystemRole - Enum in eu.etaxonomy.cdm.model.description
The role of the descriptive system of type FeatureTree.
A descriptive systeme may play different roles within a working set.
destinationMethod - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
destroy() - Method in class carbonfive.spring.web.pathparameter.ParameterizedPathFilter
 
destroy() - Method in class eu.etaxonomy.cdm.database.LocalH2
 
destroy() - Method in class eu.etaxonomy.cdm.database.LocalHsqldb
 
detail - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
DETAIL_EXT_UUID - Static variable in class eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer
 
detailSeparator - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
DeterminationEvent - Class in eu.etaxonomy.cdm.model.occurrence
 
DeterminationEvent() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
Constructor
DeterminationModifier - Class in eu.etaxonomy.cdm.model.occurrence
modifier for a determination.
DeterminationModifier() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Constructor
DeterminationModifier(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Constructor
determineCurrentLookupKey() - Method in class eu.etaxonomy.cdm.database.UpdatableRoutingDataSource
Deprecated.  
DIAGNOSIS() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "diagnosis" feature.
dictionaryClasses() - Method in class eu.etaxonomy.cdm.api.service.search.CdmMassIndexer
 
dictionaryClasses() - Method in interface eu.etaxonomy.cdm.api.service.search.ICdmMassIndexer
 
DINKA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
direction - Variable in class eu.etaxonomy.cdm.model.location.Point.Sexagesimal
 
directory - Variable in class eu.etaxonomy.cdm.persistence.dao.hibernate.AlternativeSpellingSuggestionParser
Deprecated.  
disableDefaultPatterns - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
disableReferentialConstraints() - Method in class eu.etaxonomy.cdm.database.H2DbSupport
 
disableValueConstraints() - Method in class eu.etaxonomy.cdm.database.H2DbSupport
 
disassemble(Object) - Method in class eu.etaxonomy.cdm.hibernate.UUIDUserType
 
disassemble(Object) - Method in class eu.etaxonomy.cdm.hibernate.WSDLDefinitionUserType
 
DISCUSSION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "discussion" feature.
disintegrate(SessionFactoryImplementor, SessionFactoryServiceRegistry) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerIntegrator
 
disposition - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
Distribution - Class in eu.etaxonomy.cdm.model.description
This class represents elementary distribution data for a taxon.
Distribution() - Constructor for class eu.etaxonomy.cdm.model.description.Distribution
Class constructor: creates a new empty distribution instance.
DISTRIBUTION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "distribution" feature.
DistributionImport - Class in eu.etaxonomy.cdm.io.excel.distribution
 
DistributionImport() - Constructor for class eu.etaxonomy.cdm.io.excel.distribution.DistributionImport
 
DistributionImportConfigurator - Class in eu.etaxonomy.cdm.io.excel.distribution
 
DistributionNodeComparator - Class in eu.etaxonomy.cdm.api.service
 
DistributionNodeComparator() - Constructor for class eu.etaxonomy.cdm.api.service.DistributionNodeComparator
 
DistributionTree - Class in eu.etaxonomy.cdm.api.service
 
DistributionTree() - Constructor for class eu.etaxonomy.cdm.api.service.DistributionTree
 
DIVEHI_DHIVEHI_MALDIVIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
DIVISION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
DJIBOUTIREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
DNA_EXTRACTION() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
DnaSample - Class in eu.etaxonomy.cdm.model.molecular
 
DO_OVERWRITE - Static variable in class eu.etaxonomy.cdm.common.FileCopy
 
doAccumulateDistributions(TransmissionEngineDistribution.AggregationMode, String, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.DescriptionListController
 
doAskForDate() - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator
 
doBuild(List<StateData>, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractCategoricalDescriptionBuilder
 
doBuild(Map<StatisticalMeasure, Float>, MeasurementUnit, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractQuantitativeDescriptionBuilder
 
doBuild(List<StateData>, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DefaultCategoricalDescriptionBuilder
 
doBuild(Map<StatisticalMeasure, Float>, MeasurementUnit, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DefaultQuantitativeDescriptionBuilder
 
doBuild(List<StateData>, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatCategoricalDescriptionBuilder
 
doBuild(Map<StatisticalMeasure, Float>, MeasurementUnit, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatQuantitativeDescriptionBuilder
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelAuthorImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelAuthorTeamImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelCommonNamesImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelFactsImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelNameFactsImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelNameStatusImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelOccurrenceImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelOccurrenceSourceImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelRefDetailImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonNameImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonNameRelationImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonRelationImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTypesImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelUserImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelWebMarkerCategoryImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelWebMarkerImport
 
doCheck(BerlinModelImportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelGeneralImportValidator
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorTeamExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelClassificationExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelFactExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelNameRelationExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelReferenceExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonNameExport
 
doCheck(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonRelationExport
 
doCheck(DefaultImportState<CacheUpdaterConfigurator>) - Method in class eu.etaxonomy.cdm.io.common.CacheUpdater
 
doCheck(S) - Method in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
 
doCheck(S) - Method in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
doCheck(STATE) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
doCheck(CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportRedlist
 
doCheck(DwcaImportState) - Method in class eu.etaxonomy.cdm.io.dwca.in.DwcaImport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaDescriptionExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaDistributionExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaEmlExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaImageExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaMetaDataExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaReferenceExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaResourceRelationExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTypesExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaVernacularExport
 
doCheck(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaZipExport
 
doCheck(STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase
 
doCheck(ExcelImportState) - Method in class eu.etaxonomy.cdm.io.excel.distribution.DistributionImport
 
doCheck(TaxonExcelImportState) - Method in class eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImport
 
doCheck(JaxbExportState) - Method in class eu.etaxonomy.cdm.io.jaxb.JaxbExport
 
doCheck(JaxbImportState) - Method in class eu.etaxonomy.cdm.io.jaxb.JaxbImport
 
doCheck(MarkupImportState) - Method in class eu.etaxonomy.cdm.io.markup.MarkupDocumentImport
 
doCheck(PilotOutputExportState) - Method in class eu.etaxonomy.cdm.io.pilotOutputHtml.PilotOutputDescriptionExporter
 
doCheck(PilotOutputExportState) - Method in class eu.etaxonomy.cdm.io.pilotOutputHtml.PilotOutputExporter
 
doCheck(EndnoteImportState) - Method in class eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteRecordsImport
 
doCheck(IkeyPlusImportState) - Method in class eu.etaxonomy.cdm.io.sdd.ikeyplus.IkeyPlusImport
 
doCheck(SDDImportState) - Method in class eu.etaxonomy.cdm.io.sdd.in.SDDDataSetImport
 
doCheck(SDDImportState) - Method in class eu.etaxonomy.cdm.io.sdd.in.SDDImport
 
doCheck(SDDExportState) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDCdmExporter
 
doCheck(Abcd206ImportState) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206Import
 
doCheck(SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.ExtensionTypeExcelImport
 
doCheck(SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.NamedAreaLevelExcelImport
 
doCheck(SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImport
 
doCheck(SpecimenSynthesysExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
doCheck(TaxonXImportState) - Method in class eu.etaxonomy.cdm.io.taxonx.TaxonXDescriptionImport
 
doCheck(TaxonXImportState) - Method in class eu.etaxonomy.cdm.io.taxonx.TaxonXModsImport
 
doCheck(TaxonXImportState) - Method in class eu.etaxonomy.cdm.io.taxonx.TaxonXNomenclatureImport
 
doCheck(TcsRdfImportState) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfReferenceImport
 
doCheck(TcsRdfImportState) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfTaxonImport
 
doCheck(TcsRdfImportState) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfTaxonNameImport
 
doCheck(TcsRdfImportState) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfTaxonNameRelationsImport
 
doCheck(TcsRdfImportState) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfTaxonRelationsImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlMetaDataImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlPublicationsImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlSpecimensImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlTaxonImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlTaxonNameImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlTaxonNameRelationsImport
 
doCheck(TcsXmlImportState) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlTaxonRelationsImport
 
docImport - Variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
doCompare(UUID, UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TermController
TODO write controller method documentation
doCopy(File) - Static method in class eu.etaxonomy.cdm.common.FileCopy
True if file
doCount(int, int, String) - Method in class eu.etaxonomy.cdm.io.common.DbExportBase
 
doCount(int, int, String) - Method in class eu.etaxonomy.cdm.io.tcsxml.out.TcsXmlExportBase
 
doCreatedUpdatedNotes(BerlinModelImportState, AnnotatableEntity, ResultSet) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase
 
doCreatedUpdatedNotes(BerlinModelImportState, AnnotatableEntity, ResultSet, boolean) - Method in class eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase
 
DocumentCreator - Class in eu.etaxonomy.cdm.print.out.odf
 
DocumentCreator() - Constructor for class eu.etaxonomy.cdm.print.out.odf.DocumentCreator
 
DocUtils - Class in eu.etaxonomy.cdm.common
The utility class which provides methods relating to documentation.
DocUtils() - Constructor for class eu.etaxonomy.cdm.common.DocUtils
 
doDelete(BerlinModelExportConfigurator) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorExport
 
doDelete(BerlinModelExportConfigurator) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelAuthorTeamExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelClassificationExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelFactExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelNameRelationExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelReferenceExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonNameExport
 
doDelete(BerlinModelExportState) - Method in class eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelTaxonRelationExport
 
DOES_NOT_EXCLUDE() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "does not exclude".
DOES_NOT_OVERLAP() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "does not overlap".
doExport(CONFIG) - Method in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
Executes the whole
doExportRedlist(UuidList, String, UuidList, String, HttpServletResponse, HttpServletRequest) - Method in class eu.etaxonomy.cdm.remote.controller.csv.CsvExportController
Fetches data from the application context and forwards the stream to the HttpServletResponse, which offers a file download.
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class carbonfive.spring.web.pathparameter.ParameterizedPathFilter
Wraps the request with one that will add request parameters when given a request attribute with the appropriate key.
doFind(String, UUID, Set<NamedArea>, Integer, Integer, Boolean, Boolean, Boolean, Boolean, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonPortalController
Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.
doFindBestMatchingTaxon(String, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonController
FIXME change @RequestMapping to /taxon/findBestMatchingTaxon and also move into TaxonListController
dofindByDescriptionElementFullText(Class<? extends DescriptionElementBase>, String, UUID, UuidList, List<Language>, Boolean, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonListController
 
dofindByDescriptionElementFullText(Class, String, UUID, UuidList, List<Language>, Boolean, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonPortalController
 
dofindByEverythingFullText(Class<? extends TaxonBase>, String, UUID, List<Language>, Boolean, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonListController
 
dofindByFullText(Class<? extends SpecimenOrObservationBase<?>>, String, Rectangle, List<Language>, Boolean, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.OccurrenceListController
 
dofindByFullText(Class<? extends TaxonBase>, String, UUID, List<Language>, Boolean, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonListController
 
doFindByName(String, Integer, Integer, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.NameListController
 
doFindByTaxonomicScope(UUID, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.PolytomousKeyListController
 
doFindByTitle(String, Integer, Integer, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.IdentifiableListController
Find IdentifiableEntity objects by name
doFindDescriptionElements(String, Class, Integer, Integer, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.DescriptionController
 
doFindTaxaAndNames(String, UUID, Set<NamedArea>, Integer, Integer, Boolean, Boolean, Boolean, Boolean, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonListController
Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.
doFindTitleCache(String, Integer, Integer, MatchMode, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.NameListController
 
doGenerateNaturalLanguageDescription(UUID, UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.DescriptionController
 
doGet(UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.BaseController
 
doGet(UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.DerivedUnitFacadeController
 
doGetAccepted(UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonController
Get the set of accepted Taxon entities for a given TaxonBase entity identified by the {taxon-uuid}.
doGetAcceptedNameSearch(String[], HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Returns a list of accepted names of input scientific names matching the {query} string pattern.
doGetAcceptedNameSearch(String[], String, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Returns a list of accepted names of input scientific names matching the {query} string pattern.
doGetAcceptedNameSearchDocumentation(HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Returns a documentation page for the Accepted Name Search API.
doGetAuthorTeam(UUID, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.ReferenceController
 
doGetClassificationMap(HttpServletRequest, HttpServletResponse)